miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26465 3' -56.9 NC_005357.1 + 1088 0.7 0.315033
Target:  5'- cGGUAGAUUGCcUUGGCCGugucGCGcGGCa -3'
miRNA:   3'- -UCGUCUAGCGuGACCGGCu---UGUcCCG- -5'
26465 3' -56.9 NC_005357.1 + 1482 0.74 0.16691
Target:  5'- uGGCAGGccgggguaUCGCaguGCUGGUCGGACAuGGCg -3'
miRNA:   3'- -UCGUCU--------AGCG---UGACCGGCUUGUcCCG- -5'
26465 3' -56.9 NC_005357.1 + 1867 0.78 0.094445
Target:  5'- uGCAGGUUcagcccguggccgGCGCUGGCCGggU-GGGCg -3'
miRNA:   3'- uCGUCUAG-------------CGUGACCGGCuuGuCCCG- -5'
26465 3' -56.9 NC_005357.1 + 1937 0.71 0.292097
Target:  5'- cGCGGAUCGUcugcggguuCUGGUCGAGCGcGcGGCc -3'
miRNA:   3'- uCGUCUAGCGu--------GACCGGCUUGU-C-CCG- -5'
26465 3' -56.9 NC_005357.1 + 4427 0.68 0.410444
Target:  5'- cGUAGGUCGUACccGGCCGcAACAccgccaGGCg -3'
miRNA:   3'- uCGUCUAGCGUGa-CCGGC-UUGUc-----CCG- -5'
26465 3' -56.9 NC_005357.1 + 5234 0.72 0.237358
Target:  5'- cAGCAGuUCGCGCaguucGGCCGGcagguCGGGGUc -3'
miRNA:   3'- -UCGUCuAGCGUGa----CCGGCUu----GUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 5810 0.68 0.439409
Target:  5'- gGGUAGAagcCGCcCUGGuuGGuCAGGGUu -3'
miRNA:   3'- -UCGUCUa--GCGuGACCggCUuGUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 6264 0.7 0.30724
Target:  5'- uGCGGuugaucugCGCGCUgggcaGGCCGAACAGGucGCc -3'
miRNA:   3'- uCGUCua------GCGUGA-----CCGGCUUGUCC--CG- -5'
26465 3' -56.9 NC_005357.1 + 7611 0.7 0.299595
Target:  5'- cAGCAcguGGUCGCGCaGcGCCGGACAcGuGGCc -3'
miRNA:   3'- -UCGU---CUAGCGUGaC-CGGCUUGU-C-CCG- -5'
26465 3' -56.9 NC_005357.1 + 8218 0.66 0.54344
Target:  5'- cGUAG-UCGCGCUGGUCGGcggccgucaGCAGcuuGCg -3'
miRNA:   3'- uCGUCuAGCGUGACCGGCU---------UGUCc--CG- -5'
26465 3' -56.9 NC_005357.1 + 8386 0.67 0.459354
Target:  5'- cGGCc--UCGCGCUGGCugcguagccaguCGGcCAGGGCc -3'
miRNA:   3'- -UCGucuAGCGUGACCG------------GCUuGUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 8612 0.72 0.231154
Target:  5'- aAGCuGGUUGCGCUucucGGCCGcuGCGGuGGCg -3'
miRNA:   3'- -UCGuCUAGCGUGA----CCGGCu-UGUC-CCG- -5'
26465 3' -56.9 NC_005357.1 + 8714 0.68 0.439409
Target:  5'- gGGuCGGAugUCGCGCaccuUGaGCCGGGacacCAGGGCg -3'
miRNA:   3'- -UC-GUCU--AGCGUG----AC-CGGCUU----GUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 9401 0.68 0.410444
Target:  5'- uGCAuGUCGCGCaGGCCGc---GGGCu -3'
miRNA:   3'- uCGUcUAGCGUGaCCGGCuuguCCCG- -5'
26465 3' -56.9 NC_005357.1 + 9492 0.76 0.119145
Target:  5'- cAGCcguGGUCGCcCUGGCCGAACAGccagccgugcaGGCc -3'
miRNA:   3'- -UCGu--CUAGCGuGACCGGCUUGUC-----------CCG- -5'
26465 3' -56.9 NC_005357.1 + 9881 0.68 0.406672
Target:  5'- gAGCGGcAUCGCcggcggcagcaucCUGGCCGGcaucaccagccuGCAcGGGCg -3'
miRNA:   3'- -UCGUC-UAGCGu------------GACCGGCU------------UGU-CCCG- -5'
26465 3' -56.9 NC_005357.1 + 11510 0.7 0.299595
Target:  5'- gGGCAGcgCcuGCGCUGGCgugaggcccugCGAGC-GGGCa -3'
miRNA:   3'- -UCGUCuaG--CGUGACCG-----------GCUUGuCCCG- -5'
26465 3' -56.9 NC_005357.1 + 11956 0.66 0.542354
Target:  5'- cAGCAGGUgaCGCGaugaccgcgccccCUGGCaacuGAuuCAGGGCg -3'
miRNA:   3'- -UCGUCUA--GCGU-------------GACCGg---CUu-GUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 14321 0.66 0.50062
Target:  5'- --uGGcgCGCGCcuUGGCUGAACugccGGGCc -3'
miRNA:   3'- ucgUCuaGCGUG--ACCGGCUUGu---CCCG- -5'
26465 3' -56.9 NC_005357.1 + 14647 0.74 0.179803
Target:  5'- cGCGGcgCGCGCUucguguacguguccGaGCCGGACgAGGGCa -3'
miRNA:   3'- uCGUCuaGCGUGA--------------C-CGGCUUG-UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.