miRNA display CGI


Results 21 - 40 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26465 3' -56.9 NC_005357.1 + 14969 0.67 0.465431
Target:  5'- uGGCGG--CGCGCUGGCauaccagcgcCAGGGCc -3'
miRNA:   3'- -UCGUCuaGCGUGACCGgcuu------GUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 15693 0.7 0.315033
Target:  5'- cAGCGGG-CGCGCUGGCgGuGGCccGGCu -3'
miRNA:   3'- -UCGUCUaGCGUGACCGgC-UUGucCCG- -5'
26465 3' -56.9 NC_005357.1 + 16018 0.67 0.456331
Target:  5'- gGGCAuGAguuacgcCGUGCUGGCCGAGaaguucgagcagucCAaGGGCg -3'
miRNA:   3'- -UCGU-CUa------GCGUGACCGGCUU--------------GU-CCCG- -5'
26465 3' -56.9 NC_005357.1 + 16255 0.67 0.490143
Target:  5'- uGGCGGAUgGCGUUGGCCucGCGcGcGGCc -3'
miRNA:   3'- -UCGUCUAgCGUGACCGGcuUGU-C-CCG- -5'
26465 3' -56.9 NC_005357.1 + 17670 0.69 0.364903
Target:  5'- uGGCAGGUCauuccgacaGCAUgggucgaGGCCGcGCAGGcGCg -3'
miRNA:   3'- -UCGUCUAG---------CGUGa------CCGGCuUGUCC-CG- -5'
26465 3' -56.9 NC_005357.1 + 17969 0.66 0.542354
Target:  5'- cAGCAGGUCGUcggcgucaaugucGCcgaGGCCGcGCGcGGCa -3'
miRNA:   3'- -UCGUCUAGCG-------------UGa--CCGGCuUGUcCCG- -5'
26465 3' -56.9 NC_005357.1 + 19358 0.66 0.55434
Target:  5'- cGGCGGaAUUGC-CguugaGGUCGGcCAGGGCc -3'
miRNA:   3'- -UCGUC-UAGCGuGa----CCGGCUuGUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 19586 0.68 0.401056
Target:  5'- cGCAGcgCGCGCUgucGGCUGucgGCAGcgcGGCg -3'
miRNA:   3'- uCGUCuaGCGUGA---CCGGCu--UGUC---CCG- -5'
26465 3' -56.9 NC_005357.1 + 20300 0.68 0.391806
Target:  5'- uAGCGGGUUGCuCggcGGCCGGuuGCGaugcGGGCu -3'
miRNA:   3'- -UCGUCUAGCGuGa--CCGGCU--UGU----CCCG- -5'
26465 3' -56.9 NC_005357.1 + 21264 0.74 0.162348
Target:  5'- cAGCAGGcCGCGCU-GuuGAAcCAGGGCg -3'
miRNA:   3'- -UCGUCUaGCGUGAcCggCUU-GUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 22417 0.67 0.47977
Target:  5'- uGCAGG-CGCGCcauGCCGAGCAaguuGGCg -3'
miRNA:   3'- uCGUCUaGCGUGac-CGGCUUGUc---CCG- -5'
26465 3' -56.9 NC_005357.1 + 23380 0.66 0.50062
Target:  5'- cGCuGAUCGaCGCcgccggcGGCCGcuacCAGGGCu -3'
miRNA:   3'- uCGuCUAGC-GUGa------CCGGCuu--GUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 24251 0.67 0.448324
Target:  5'- cAGCAuggaaguGAUCGCACUGa---AACAGGGCu -3'
miRNA:   3'- -UCGU-------CUAGCGUGACcggcUUGUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 25755 0.69 0.34769
Target:  5'- cGCuGggCGCGCU-GCUGGGCGGcGGCa -3'
miRNA:   3'- uCGuCuaGCGUGAcCGGCUUGUC-CCG- -5'
26465 3' -56.9 NC_005357.1 + 26054 0.67 0.490143
Target:  5'- cGGCGGG-CGCGCUccaugcgcucGG-CGAACucGGGGCg -3'
miRNA:   3'- -UCGUCUaGCGUGA----------CCgGCUUG--UCCCG- -5'
26465 3' -56.9 NC_005357.1 + 26233 0.69 0.339304
Target:  5'- cGCAGuuuugCGCGCgucGCCGAagGCAcGGGCa -3'
miRNA:   3'- uCGUCua---GCGUGac-CGGCU--UGU-CCCG- -5'
26465 3' -56.9 NC_005357.1 + 28557 0.71 0.277545
Target:  5'- cGGCugucGAUCGCAUaaaGGCCGAaaccuuccgGCAGGcGCa -3'
miRNA:   3'- -UCGu---CUAGCGUGa--CCGGCU---------UGUCC-CG- -5'
26465 3' -56.9 NC_005357.1 + 29267 0.66 0.55434
Target:  5'- cGCGGc-CGaCACUGGCCGAcauCGaGGCg -3'
miRNA:   3'- uCGUCuaGC-GUGACCGGCUu--GUcCCG- -5'
26465 3' -56.9 NC_005357.1 + 31445 0.67 0.469505
Target:  5'- uGCA-AUCcgGC-CUGGCCGAACAGguGGCc -3'
miRNA:   3'- uCGUcUAG--CGuGACCGGCUUGUC--CCG- -5'
26465 3' -56.9 NC_005357.1 + 31559 0.67 0.469505
Target:  5'- cGCGcAUCGCGCcGaCCGAagccacGCAGGGCc -3'
miRNA:   3'- uCGUcUAGCGUGaCcGGCU------UGUCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.