Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26465 | 3' | -56.9 | NC_005357.1 | + | 25755 | 0.69 | 0.34769 |
Target: 5'- cGCuGggCGCGCU-GCUGGGCGGcGGCa -3' miRNA: 3'- uCGuCuaGCGUGAcCGGCUUGUC-CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 20300 | 0.68 | 0.391806 |
Target: 5'- uAGCGGGUUGCuCggcGGCCGGuuGCGaugcGGGCu -3' miRNA: 3'- -UCGUCUAGCGuGa--CCGGCU--UGU----CCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 9401 | 0.68 | 0.410444 |
Target: 5'- uGCAuGUCGCGCaGGCCGc---GGGCu -3' miRNA: 3'- uCGUcUAGCGUGaCCGGCuuguCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 15693 | 0.7 | 0.315033 |
Target: 5'- cAGCGGG-CGCGCUGGCgGuGGCccGGCu -3' miRNA: 3'- -UCGUCUaGCGUGACCGgC-UUGucCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 17670 | 0.69 | 0.364903 |
Target: 5'- uGGCAGGUCauuccgacaGCAUgggucgaGGCCGcGCAGGcGCg -3' miRNA: 3'- -UCGUCUAG---------CGUGa------CCGGCuUGUCC-CG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 39779 | 0.69 | 0.373728 |
Target: 5'- cGCaAGAccUCGCACggcaaGcGCCGGACguGGGGCu -3' miRNA: 3'- uCG-UCU--AGCGUGa----C-CGGCUUG--UCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 40883 | 0.68 | 0.400125 |
Target: 5'- gAGCGGuUCG-GCUuuaccaaGGCCGAACugcuGGGCg -3' miRNA: 3'- -UCGUCuAGCgUGA-------CCGGCUUGu---CCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 19586 | 0.68 | 0.401056 |
Target: 5'- cGCAGcgCGCGCUgucGGCUGucgGCAGcgcGGCg -3' miRNA: 3'- uCGUCuaGCGUGA---CCGGCu--UGUC---CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 9881 | 0.68 | 0.406672 |
Target: 5'- gAGCGGcAUCGCcggcggcagcaucCUGGCCGGcaucaccagccuGCAcGGGCg -3' miRNA: 3'- -UCGUC-UAGCGu------------GACCGGCU------------UGU-CCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 4427 | 0.68 | 0.410444 |
Target: 5'- cGUAGGUCGUACccGGCCGcAACAccgccaGGCg -3' miRNA: 3'- uCGUCUAGCGUGa-CCGGC-UUGUc-----CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 7611 | 0.7 | 0.299595 |
Target: 5'- cAGCAcguGGUCGCGCaGcGCCGGACAcGuGGCc -3' miRNA: 3'- -UCGU---CUAGCGUGaC-CGGCUUGU-C-CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 1937 | 0.71 | 0.292097 |
Target: 5'- cGCGGAUCGUcugcggguuCUGGUCGAGCGcGcGGCc -3' miRNA: 3'- uCGUCUAGCGu--------GACCGGCUUGU-C-CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 28557 | 0.71 | 0.277545 |
Target: 5'- cGGCugucGAUCGCAUaaaGGCCGAaaccuuccgGCAGGcGCa -3' miRNA: 3'- -UCGu---CUAGCGUGa--CCGGCU---------UGUCC-CG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 35219 | 0.72 | 0.241784 |
Target: 5'- cGCAGAugcugccguggacaUCGCGCUgucccGGCUGcguCAGGGCg -3' miRNA: 3'- uCGUCU--------------AGCGUGA-----CCGGCuu-GUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 5234 | 0.72 | 0.237358 |
Target: 5'- cAGCAGuUCGCGCaguucGGCCGGcagguCGGGGUc -3' miRNA: 3'- -UCGUCuAGCGUGa----CCGGCUu----GUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 14647 | 0.74 | 0.179803 |
Target: 5'- cGCGGcgCGCGCUucguguacguguccGaGCCGGACgAGGGCa -3' miRNA: 3'- uCGUCuaGCGUGA--------------C-CGGCUUG-UCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 21264 | 0.74 | 0.162348 |
Target: 5'- cAGCAGGcCGCGCU-GuuGAAcCAGGGCg -3' miRNA: 3'- -UCGUCUaGCGUGAcCggCUU-GUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 9492 | 0.76 | 0.119145 |
Target: 5'- cAGCcguGGUCGCcCUGGCCGAACAGccagccgugcaGGCc -3' miRNA: 3'- -UCGu--CUAGCGuGACCGGCUUGUC-----------CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 1867 | 0.78 | 0.094445 |
Target: 5'- uGCAGGUUcagcccguggccgGCGCUGGCCGggU-GGGCg -3' miRNA: 3'- uCGUCUAG-------------CGUGACCGGCuuGuCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 33219 | 0.66 | 0.55434 |
Target: 5'- cGCAGAaCGUGCgccgcgccGCCGAGCAGGcCa -3' miRNA: 3'- uCGUCUaGCGUGac------CGGCUUGUCCcG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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