miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26465 3' -56.9 NC_005357.1 + 42038 0.67 0.47977
Target:  5'- -aCAGucgCGCGCUGGCCGcgcucaaucGGCAGGccaaGCa -3'
miRNA:   3'- ucGUCua-GCGUGACCGGC---------UUGUCC----CG- -5'
26465 3' -56.9 NC_005357.1 + 40883 0.68 0.400125
Target:  5'- gAGCGGuUCG-GCUuuaccaaGGCCGAACugcuGGGCg -3'
miRNA:   3'- -UCGUCuAGCgUGA-------CCGGCUUGu---CCCG- -5'
26465 3' -56.9 NC_005357.1 + 40456 0.67 0.44932
Target:  5'- uGGCAGGUgGCGC---CCGuaucGCGGGGCa -3'
miRNA:   3'- -UCGUCUAgCGUGaccGGCu---UGUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 39779 0.69 0.373728
Target:  5'- cGCaAGAccUCGCACggcaaGcGCCGGACguGGGGCu -3'
miRNA:   3'- uCG-UCU--AGCGUGa----C-CGGCUUG--UCCCG- -5'
26465 3' -56.9 NC_005357.1 + 37843 0.67 0.459354
Target:  5'- gAGCAGuuccUCGC-CUGGCgcacCGAGCAGcgccucGGCg -3'
miRNA:   3'- -UCGUCu---AGCGuGACCG----GCUUGUC------CCG- -5'
26465 3' -56.9 NC_005357.1 + 37809 0.66 0.50062
Target:  5'- cGGCAGcgCGgGCcaacauuggccUGGCUGAcCuGGGCg -3'
miRNA:   3'- -UCGUCuaGCgUG-----------ACCGGCUuGuCCCG- -5'
26465 3' -56.9 NC_005357.1 + 35219 0.72 0.241784
Target:  5'- cGCAGAugcugccguggacaUCGCGCUgucccGGCUGcguCAGGGCg -3'
miRNA:   3'- uCGUCU--------------AGCGUGA-----CCGGCuu-GUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 35192 0.71 0.263576
Target:  5'- cGGCc---CGCGCcagUGGCCGAaguuGCAGGGCu -3'
miRNA:   3'- -UCGucuaGCGUG---ACCGGCU----UGUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 34889 0.66 0.54344
Target:  5'- cGCGGAUCgaGCACgccGCCGAGCGcacGGUa -3'
miRNA:   3'- uCGUCUAG--CGUGac-CGGCUUGUc--CCG- -5'
26465 3' -56.9 NC_005357.1 + 34122 0.66 0.52186
Target:  5'- gAGCAGcgCGCaccGCUGGCUGcacugccccGGCAGcguGGCc -3'
miRNA:   3'- -UCGUCuaGCG---UGACCGGC---------UUGUC---CCG- -5'
26465 3' -56.9 NC_005357.1 + 33623 0.66 0.53261
Target:  5'- cAGCAGAUCgGUACUGaCCG-GCGcGGCc -3'
miRNA:   3'- -UCGUCUAG-CGUGACcGGCuUGUcCCG- -5'
26465 3' -56.9 NC_005357.1 + 33219 0.66 0.55434
Target:  5'- cGCAGAaCGUGCgccgcgccGCCGAGCAGGcCa -3'
miRNA:   3'- uCGUCUaGCGUGac------CGGCUUGUCCcG- -5'
26465 3' -56.9 NC_005357.1 + 32915 0.67 0.490143
Target:  5'- cAGCAuGAugccacuguUCGCAC-GGCgGAACAGGcugGCa -3'
miRNA:   3'- -UCGU-CU---------AGCGUGaCCGgCUUGUCC---CG- -5'
26465 3' -56.9 NC_005357.1 + 32886 1.11 0.000341
Target:  5'- gAGCAGAUCGCACUGGCCGAACAGGGCc -3'
miRNA:   3'- -UCGUCUAGCGUGACCGGCUUGUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 32845 0.67 0.47977
Target:  5'- cGGCu--UCGC-CUGGCCGcaGACGGucGGCg -3'
miRNA:   3'- -UCGucuAGCGuGACCGGC--UUGUC--CCG- -5'
26465 3' -56.9 NC_005357.1 + 31559 0.67 0.469505
Target:  5'- cGCGcAUCGCGCcGaCCGAagccacGCAGGGCc -3'
miRNA:   3'- uCGUcUAGCGUGaCcGGCU------UGUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 31445 0.67 0.469505
Target:  5'- uGCA-AUCcgGC-CUGGCCGAACAGguGGCc -3'
miRNA:   3'- uCGUcUAG--CGuGACCGGCUUGUC--CCG- -5'
26465 3' -56.9 NC_005357.1 + 29267 0.66 0.55434
Target:  5'- cGCGGc-CGaCACUGGCCGAcauCGaGGCg -3'
miRNA:   3'- uCGUCuaGC-GUGACCGGCUu--GUcCCG- -5'
26465 3' -56.9 NC_005357.1 + 28557 0.71 0.277545
Target:  5'- cGGCugucGAUCGCAUaaaGGCCGAaaccuuccgGCAGGcGCa -3'
miRNA:   3'- -UCGu---CUAGCGUGa--CCGGCU---------UGUCC-CG- -5'
26465 3' -56.9 NC_005357.1 + 26233 0.69 0.339304
Target:  5'- cGCAGuuuugCGCGCgucGCCGAagGCAcGGGCa -3'
miRNA:   3'- uCGUCua---GCGUGac-CGGCU--UGU-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.