miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26466 3' -60.7 NC_005357.1 + 27384 0.66 0.364135
Target:  5'- uGCCCGCaucaaCGCGGGCA--UCGCCaacaccaaCGCGg -3'
miRNA:   3'- gCGGGUG-----GUGCUCGUcaAGCGG--------GCGC- -5'
26466 3' -60.7 NC_005357.1 + 27252 0.68 0.293824
Target:  5'- gCGCCCcaggcucuugGCCgaggcaAUGAaccGCAGUUCGCCgCGCGc -3'
miRNA:   3'- -GCGGG----------UGG------UGCU---CGUCAAGCGG-GCGC- -5'
26466 3' -60.7 NC_005357.1 + 26737 0.67 0.347549
Target:  5'- gGgCCACCGCcAGCg---CGCCCGCu -3'
miRNA:   3'- gCgGGUGGUGcUCGucaaGCGGGCGc -5'
26466 3' -60.7 NC_005357.1 + 26430 0.68 0.301086
Target:  5'- uGCCCucgACCuCGuGCAGUUCGCggaUGCGc -3'
miRNA:   3'- gCGGG---UGGuGCuCGUCAAGCGg--GCGC- -5'
26466 3' -60.7 NC_005357.1 + 26277 0.68 0.266146
Target:  5'- aCGCCCACCACcaucAGCGug-CGgCCGCa -3'
miRNA:   3'- -GCGGGUGGUGc---UCGUcaaGCgGGCGc -5'
26466 3' -60.7 NC_005357.1 + 25642 0.68 0.272862
Target:  5'- gCGUCCACCuCG-GCgAGUUCuGCCgGCGu -3'
miRNA:   3'- -GCGGGUGGuGCuCG-UCAAG-CGGgCGC- -5'
26466 3' -60.7 NC_005357.1 + 25366 0.67 0.331509
Target:  5'- aGCCgGCCAcCGGGCAGg-CGCCagaaGCc -3'
miRNA:   3'- gCGGgUGGU-GCUCGUCaaGCGGg---CGc -5'
26466 3' -60.7 NC_005357.1 + 25241 0.66 0.364135
Target:  5'- aGCCCAUgACGAagcGCAccugUUGCUCGCGc -3'
miRNA:   3'- gCGGGUGgUGCU---CGUca--AGCGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 25057 0.67 0.331509
Target:  5'- cCGCCguUACCAuCGGGCAGcaUCGCCacccaGCGc -3'
miRNA:   3'- -GCGG--GUGGU-GCUCGUCa-AGCGGg----CGC- -5'
26466 3' -60.7 NC_005357.1 + 24774 0.68 0.301086
Target:  5'- uGaCCUGCCACGGGUcGUccUCgauGCCCGCGu -3'
miRNA:   3'- gC-GGGUGGUGCUCGuCA--AG---CGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 24673 0.73 0.130966
Target:  5'- gCGCCCGCCGCGGGCcacGUccaCGCCCagGCu -3'
miRNA:   3'- -GCGGGUGGUGCUCGu--CAa--GCGGG--CGc -5'
26466 3' -60.7 NC_005357.1 + 24576 0.66 0.372631
Target:  5'- gGCCgGCCACGGuCGGgcCGUCCgGCGu -3'
miRNA:   3'- gCGGgUGGUGCUcGUCaaGCGGG-CGC- -5'
26466 3' -60.7 NC_005357.1 + 22510 0.68 0.293824
Target:  5'- uGCCCGCCaucauccccgcaGCGAGCAcgcgcagCGCgCGCGu -3'
miRNA:   3'- gCGGGUGG------------UGCUCGUcaa----GCGgGCGC- -5'
26466 3' -60.7 NC_005357.1 + 18909 0.66 0.364135
Target:  5'- uGCgCCGCCugGAa-GGcgCGCUCGCGg -3'
miRNA:   3'- gCG-GGUGGugCUcgUCaaGCGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 18759 0.72 0.158274
Target:  5'- gGCCCgaccgagggucGCCugGuGCAGUUgcUGCCCGCc -3'
miRNA:   3'- gCGGG-----------UGGugCuCGUCAA--GCGGGCGc -5'
26466 3' -60.7 NC_005357.1 + 17847 0.66 0.372631
Target:  5'- uGCCCGCCACcguGGCcucgUCGCCCa-- -3'
miRNA:   3'- gCGGGUGGUGc--UCGuca-AGCGGGcgc -5'
26466 3' -60.7 NC_005357.1 + 17765 0.66 0.373488
Target:  5'- gGCCCGCgGCGGGCGcgacaacaccauccUgGCCCGCc -3'
miRNA:   3'- gCGGGUGgUGCUCGUca------------AgCGGGCGc -5'
26466 3' -60.7 NC_005357.1 + 17420 0.67 0.33946
Target:  5'- gCGCCCAcgucgcCCuuGAGCAGUggcCCCGCc -3'
miRNA:   3'- -GCGGGU------GGugCUCGUCAagcGGGCGc -5'
26466 3' -60.7 NC_005357.1 + 17265 0.71 0.172858
Target:  5'- cCGCCgACCACGAGCgagggccGGUggguuaucgacuucuUCGCcCCGUGg -3'
miRNA:   3'- -GCGGgUGGUGCUCG-------UCA---------------AGCG-GGCGC- -5'
26466 3' -60.7 NC_005357.1 + 16668 0.67 0.316021
Target:  5'- uCGUugCCGCCGCccAGCAGcgCGCCCaGCGu -3'
miRNA:   3'- -GCG--GGUGGUGc-UCGUCaaGCGGG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.