miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26466 3' -60.7 NC_005357.1 + 40431 0.7 0.209972
Target:  5'- gCGCCUgggccucaagaucaGCCACuGGCAGguggCGCCCGUa -3'
miRNA:   3'- -GCGGG--------------UGGUGcUCGUCaa--GCGGGCGc -5'
26466 3' -60.7 NC_005357.1 + 39607 0.67 0.33946
Target:  5'- gCGCgUgGCCGCGAGCAccUgGCCCGaCGa -3'
miRNA:   3'- -GCG-GgUGGUGCUCGUcaAgCGGGC-GC- -5'
26466 3' -60.7 NC_005357.1 + 38699 0.67 0.331509
Target:  5'- uGCCCACCACcGGCGugaacggcacGggCGCCacgaGCGc -3'
miRNA:   3'- gCGGGUGGUGcUCGU----------CaaGCGGg---CGC- -5'
26466 3' -60.7 NC_005357.1 + 38694 0.66 0.398916
Target:  5'- cCGCCCucaucaaauCCGCGAGCAugagcGgaUGCgCCGCa -3'
miRNA:   3'- -GCGGGu--------GGUGCUCGU-----CaaGCG-GGCGc -5'
26466 3' -60.7 NC_005357.1 + 37908 0.71 0.180829
Target:  5'- cCGCCCAgcacgccacgUCACGGGCGc--CGCCCGUGa -3'
miRNA:   3'- -GCGGGU----------GGUGCUCGUcaaGCGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 37820 0.66 0.355774
Target:  5'- cCGCCgacaucauCGCCGaggcCGAGCAGUuccUCGCCUgGCGc -3'
miRNA:   3'- -GCGG--------GUGGU----GCUCGUCA---AGCGGG-CGC- -5'
26466 3' -60.7 NC_005357.1 + 35989 0.68 0.301086
Target:  5'- aCGCCU-UCGCGGGCGGUggugUCGCgaGCGa -3'
miRNA:   3'- -GCGGGuGGUGCUCGUCA----AGCGggCGC- -5'
26466 3' -60.7 NC_005357.1 + 35420 0.71 0.180829
Target:  5'- aCGCCCAUCacGCGAGCcGaccCGCUCGCGc -3'
miRNA:   3'- -GCGGGUGG--UGCUCGuCaa-GCGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 33896 0.7 0.20088
Target:  5'- gGCCUgcgauACCugG-GCaAGUUCGCCgGCGa -3'
miRNA:   3'- gCGGG-----UGGugCuCG-UCAAGCGGgCGC- -5'
26466 3' -60.7 NC_005357.1 + 33229 0.67 0.33946
Target:  5'- gCGCCgCGCCGcCGAGCAGgccaacgUCGaCgGCGc -3'
miRNA:   3'- -GCGG-GUGGU-GCUCGUCa------AGCgGgCGC- -5'
26466 3' -60.7 NC_005357.1 + 32872 0.69 0.243075
Target:  5'- uGCUCGCCaccgGCGAGCAGaUCGCacuggccgaacagggCCGCa -3'
miRNA:   3'- gCGGGUGG----UGCUCGUCaAGCG---------------GGCGc -5'
26466 3' -60.7 NC_005357.1 + 32692 1.09 0.000231
Target:  5'- gCGCCCACCACGAGCAGUUCGCCCGCGg -3'
miRNA:   3'- -GCGGGUGGUGCUCGUCAAGCGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 32672 0.74 0.105117
Target:  5'- uGCCCgacgugaaGCC-CGAGCAGUUCGCCgaCGUGc -3'
miRNA:   3'- gCGGG--------UGGuGCUCGUCAAGCGG--GCGC- -5'
26466 3' -60.7 NC_005357.1 + 31717 0.67 0.323696
Target:  5'- aGCCCGCCGCGcGCGGgcuuuuucaCGCCUaaaaauauGCGc -3'
miRNA:   3'- gCGGGUGGUGCuCGUCaa-------GCGGG--------CGC- -5'
26466 3' -60.7 NC_005357.1 + 31509 0.66 0.355774
Target:  5'- gGCCCugCaaaccgGCGGGCAGgUCGCCauuccgGUGg -3'
miRNA:   3'- gCGGGugG------UGCUCGUCaAGCGGg-----CGC- -5'
26466 3' -60.7 NC_005357.1 + 30746 0.67 0.307738
Target:  5'- aGUCCGCCGCagucugacaccuuGGGCAGUgguguuUCGUCCgGCGu -3'
miRNA:   3'- gCGGGUGGUG-------------CUCGUCA------AGCGGG-CGC- -5'
26466 3' -60.7 NC_005357.1 + 29313 0.66 0.398916
Target:  5'- uGCCCAgCACuucaaGGCGGUggcggUCGCCgGCc -3'
miRNA:   3'- gCGGGUgGUGc----UCGUCA-----AGCGGgCGc -5'
26466 3' -60.7 NC_005357.1 + 27998 0.68 0.2867
Target:  5'- uCGCCCAaCACGGugccGCAGgcgCGCCUgGCGa -3'
miRNA:   3'- -GCGGGUgGUGCU----CGUCaa-GCGGG-CGC- -5'
26466 3' -60.7 NC_005357.1 + 27522 0.7 0.211613
Target:  5'- gGCCgGCCAgcAGCAGaUCGCCgCGCa -3'
miRNA:   3'- gCGGgUGGUgcUCGUCaAGCGG-GCGc -5'
26466 3' -60.7 NC_005357.1 + 27418 0.66 0.364135
Target:  5'- uCGCgCGCCugGcGCAccgCGCCCgGCGg -3'
miRNA:   3'- -GCGgGUGGugCuCGUcaaGCGGG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.