miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26466 3' -60.7 NC_005357.1 + 33229 0.67 0.33946
Target:  5'- gCGCCgCGCCGcCGAGCAGgccaacgUCGaCgGCGc -3'
miRNA:   3'- -GCGG-GUGGU-GCUCGUCa------AGCgGgCGC- -5'
26466 3' -60.7 NC_005357.1 + 6991 0.67 0.33946
Target:  5'- gGCUuucaCACgCGCGAGCGGgUCGgCUCGCGu -3'
miRNA:   3'- gCGG----GUG-GUGCUCGUCaAGC-GGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 25057 0.67 0.331509
Target:  5'- cCGCCguUACCAuCGGGCAGcaUCGCCacccaGCGc -3'
miRNA:   3'- -GCGG--GUGGU-GCUCGUCa-AGCGGg----CGC- -5'
26466 3' -60.7 NC_005357.1 + 5535 0.67 0.331509
Target:  5'- cCGCCCAgguuCCGCc--CAGgUCGCCCGCc -3'
miRNA:   3'- -GCGGGU----GGUGcucGUCaAGCGGGCGc -5'
26466 3' -60.7 NC_005357.1 + 25366 0.67 0.331509
Target:  5'- aGCCgGCCAcCGGGCAGg-CGCCagaaGCc -3'
miRNA:   3'- gCGGgUGGU-GCUCGUCaaGCGGg---CGc -5'
26466 3' -60.7 NC_005357.1 + 38699 0.67 0.331509
Target:  5'- uGCCCACCACcGGCGugaacggcacGggCGCCacgaGCGc -3'
miRNA:   3'- gCGGGUGGUGcUCGU----------CaaGCGGg---CGC- -5'
26466 3' -60.7 NC_005357.1 + 4898 0.67 0.331509
Target:  5'- gGCCUcguuuucgGCCACGguggaaacgucGGCAGcgaUGCCCGCGa -3'
miRNA:   3'- gCGGG--------UGGUGC-----------UCGUCaa-GCGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 16596 0.67 0.331509
Target:  5'- gGCCgACCACGcgauGguGUUgGCgCCGCc -3'
miRNA:   3'- gCGGgUGGUGCu---CguCAAgCG-GGCGc -5'
26466 3' -60.7 NC_005357.1 + 6740 0.67 0.323696
Target:  5'- gGgCCGCCGCGcucaauAGCggaaaggucuuuAGUUUGCCCGCc -3'
miRNA:   3'- gCgGGUGGUGC------UCG------------UCAAGCGGGCGc -5'
26466 3' -60.7 NC_005357.1 + 31717 0.67 0.323696
Target:  5'- aGCCCGCCGCGcGCGGgcuuuuucaCGCCUaaaaauauGCGc -3'
miRNA:   3'- gCGGGUGGUGCuCGUCaa-------GCGGG--------CGC- -5'
26466 3' -60.7 NC_005357.1 + 165 0.67 0.316021
Target:  5'- uGCCCaagcuGCCGCGcGCAGaaUGCCgGCGu -3'
miRNA:   3'- gCGGG-----UGGUGCuCGUCaaGCGGgCGC- -5'
26466 3' -60.7 NC_005357.1 + 16668 0.67 0.316021
Target:  5'- uCGUugCCGCCGCccAGCAGcgCGCCCaGCGu -3'
miRNA:   3'- -GCG--GGUGGUGc-UCGUCaaGCGGG-CGC- -5'
26466 3' -60.7 NC_005357.1 + 9723 0.67 0.308484
Target:  5'- aCGCCUcgaaGCCGCGGGCGaacUGCUCGUGg -3'
miRNA:   3'- -GCGGG----UGGUGCUCGUcaaGCGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 402 0.67 0.308484
Target:  5'- gCGCCCACCagcagcACG-GCGGUgaUCGUCgGCc -3'
miRNA:   3'- -GCGGGUGG------UGCuCGUCA--AGCGGgCGc -5'
26466 3' -60.7 NC_005357.1 + 11125 0.67 0.308484
Target:  5'- gGUUCAaacgUGCGAGCAGUUCGgCCUGCu -3'
miRNA:   3'- gCGGGUg---GUGCUCGUCAAGC-GGGCGc -5'
26466 3' -60.7 NC_005357.1 + 30746 0.67 0.307738
Target:  5'- aGUCCGCCGCagucugacaccuuGGGCAGUgguguuUCGUCCgGCGu -3'
miRNA:   3'- gCGGGUGGUG-------------CUCGUCA------AGCGGG-CGC- -5'
26466 3' -60.7 NC_005357.1 + 24774 0.68 0.301086
Target:  5'- uGaCCUGCCACGGGUcGUccUCgauGCCCGCGu -3'
miRNA:   3'- gC-GGGUGGUGCUCGuCA--AG---CGGGCGC- -5'
26466 3' -60.7 NC_005357.1 + 26430 0.68 0.301086
Target:  5'- uGCCCucgACCuCGuGCAGUUCGCggaUGCGc -3'
miRNA:   3'- gCGGG---UGGuGCuCGUCAAGCGg--GCGC- -5'
26466 3' -60.7 NC_005357.1 + 11241 0.68 0.301086
Target:  5'- aCGCCCACUAgCGuGGCgaugagGGUUUGCgCUGCGg -3'
miRNA:   3'- -GCGGGUGGU-GC-UCG------UCAAGCG-GGCGC- -5'
26466 3' -60.7 NC_005357.1 + 35989 0.68 0.301086
Target:  5'- aCGCCU-UCGCGGGCGGUggugUCGCgaGCGa -3'
miRNA:   3'- -GCGGGuGGUGCUCGUCA----AGCGggCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.