Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26466 | 3' | -60.7 | NC_005357.1 | + | 27252 | 0.68 | 0.293824 |
Target: 5'- gCGCCCcaggcucuugGCCgaggcaAUGAaccGCAGUUCGCCgCGCGc -3' miRNA: 3'- -GCGGG----------UGG------UGCU---CGUCAAGCGG-GCGC- -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 22510 | 0.68 | 0.293824 |
Target: 5'- uGCCCGCCaucauccccgcaGCGAGCAcgcgcagCGCgCGCGu -3' miRNA: 3'- gCGGGUGG------------UGCUCGUcaa----GCGgGCGC- -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 15995 | 0.68 | 0.2867 |
Target: 5'- gGUgCGCCGCGcGCAGggacaggUCGCCgGUGa -3' miRNA: 3'- gCGgGUGGUGCuCGUCa------AGCGGgCGC- -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 27998 | 0.68 | 0.2867 |
Target: 5'- uCGCCCAaCACGGugccGCAGgcgCGCCUgGCGa -3' miRNA: 3'- -GCGGGUgGUGCU----CGUCaa-GCGGG-CGC- -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 10924 | 0.68 | 0.279022 |
Target: 5'- uGCCCGCCGguuugcagggccuCGGGCAGUU-GCgCgGCGa -3' miRNA: 3'- gCGGGUGGU-------------GCUCGUCAAgCG-GgCGC- -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 25642 | 0.68 | 0.272862 |
Target: 5'- gCGUCCACCuCG-GCgAGUUCuGCCgGCGu -3' miRNA: 3'- -GCGGGUGGuGCuCG-UCAAG-CGGgCGC- -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 26277 | 0.68 | 0.266146 |
Target: 5'- aCGCCCACCACcaucAGCGug-CGgCCGCa -3' miRNA: 3'- -GCGGGUGGUGc---UCGUcaaGCgGGCGc -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 32872 | 0.69 | 0.243075 |
Target: 5'- uGCUCGCCaccgGCGAGCAGaUCGCacuggccgaacagggCCGCa -3' miRNA: 3'- gCGGGUGG----UGCUCGUCaAGCG---------------GGCGc -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 27522 | 0.7 | 0.211613 |
Target: 5'- gGCCgGCCAgcAGCAGaUCGCCgCGCa -3' miRNA: 3'- gCGGgUGGUgcUCGUCaAGCGG-GCGc -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 40431 | 0.7 | 0.209972 |
Target: 5'- gCGCCUgggccucaagaucaGCCACuGGCAGguggCGCCCGUa -3' miRNA: 3'- -GCGGG--------------UGGUGcUCGUCaa--GCGGGCGc -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 5603 | 0.7 | 0.206186 |
Target: 5'- gGCCCACUcgGCGGGguGcguUUCGCgCGUGg -3' miRNA: 3'- gCGGGUGG--UGCUCguC---AAGCGgGCGC- -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 33896 | 0.7 | 0.20088 |
Target: 5'- gGCCUgcgauACCugG-GCaAGUUCGCCgGCGa -3' miRNA: 3'- gCGGG-----UGGugCuCG-UCAAGCGGgCGC- -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 13495 | 0.71 | 0.192637 |
Target: 5'- uGCCgACCGCGccuuugggcgagguaAGCGGUUugcCGUCCGCGc -3' miRNA: 3'- gCGGgUGGUGC---------------UCGUCAA---GCGGGCGC- -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 12667 | 0.71 | 0.190623 |
Target: 5'- uCGCCCAUCAUGcGCAGgcgcgugUCgagGCCCGCc -3' miRNA: 3'- -GCGGGUGGUGCuCGUCa------AG---CGGGCGc -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 14368 | 0.71 | 0.185669 |
Target: 5'- uGCCCGCUguuCGAGCAGaccgUCGCCgaCGUGu -3' miRNA: 3'- gCGGGUGGu--GCUCGUCa---AGCGG--GCGC- -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 37908 | 0.71 | 0.180829 |
Target: 5'- cCGCCCAgcacgccacgUCACGGGCGc--CGCCCGUGa -3' miRNA: 3'- -GCGGGU----------GGUGCUCGUcaaGCGGGCGC- -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 35420 | 0.71 | 0.180829 |
Target: 5'- aCGCCCAUCacGCGAGCcGaccCGCUCGCGc -3' miRNA: 3'- -GCGGGUGG--UGCUCGuCaa-GCGGGCGC- -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 17265 | 0.71 | 0.172858 |
Target: 5'- cCGCCgACCACGAGCgagggccGGUggguuaucgacuucuUCGCcCCGUGg -3' miRNA: 3'- -GCGGgUGGUGCUCG-------UCA---------------AGCG-GGCGC- -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 18759 | 0.72 | 0.158274 |
Target: 5'- gGCCCgaccgagggucGCCugGuGCAGUUgcUGCCCGCc -3' miRNA: 3'- gCGGG-----------UGGugCuCGUCAA--GCGGGCGc -5' |
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26466 | 3' | -60.7 | NC_005357.1 | + | 24673 | 0.73 | 0.130966 |
Target: 5'- gCGCCCGCCGCGGGCcacGUccaCGCCCagGCu -3' miRNA: 3'- -GCGGGUGGUGCUCGu--CAa--GCGGG--CGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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