miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 3' -58.5 NC_005357.1 + 31696 1.05 0.00048
Target:  5'- cUUGGCGAGCAGCAAGGCGACGACGCAu -3'
miRNA:   3'- -AACCGCUCGUCGUUCCGCUGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 8564 0.78 0.056861
Target:  5'- aUGGCGGGCAGCGacAGGCGcgacACGACGg- -3'
miRNA:   3'- aACCGCUCGUCGU--UCCGC----UGCUGCgu -5'
26467 3' -58.5 NC_005357.1 + 24315 0.73 0.147546
Target:  5'- -cGGCGAGCAGCcgcgggucAGGCGgcagaGCGAUGCc -3'
miRNA:   3'- aaCCGCUCGUCGu-------UCCGC-----UGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 5611 0.73 0.151736
Target:  5'- -cGGCGGGguGCGuuucgcgcguGGCG-CGGCGCAg -3'
miRNA:   3'- aaCCGCUCguCGUu---------CCGCuGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 21869 0.72 0.179212
Target:  5'- gUGGCucauGAGCAGCAAgcGGgGGCGcCGCAu -3'
miRNA:   3'- aACCG----CUCGUCGUU--CCgCUGCuGCGU- -5'
26467 3' -58.5 NC_005357.1 + 31111 0.71 0.1842
Target:  5'- -cGGCGAGUggugcgagauAGCGGGgacuuuucagcGCGACGACGCu -3'
miRNA:   3'- aaCCGCUCG----------UCGUUC-----------CGCUGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 16238 0.71 0.1842
Target:  5'- -cGGUGAGCGGCAcgauauGGCGgAUGGCGUu -3'
miRNA:   3'- aaCCGCUCGUCGUu-----CCGC-UGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 38550 0.71 0.20484
Target:  5'- -cGGCGAcgGCAGCGcGGCcuacagcGACGGCGCc -3'
miRNA:   3'- aaCCGCU--CGUCGUuCCG-------CUGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 17351 0.71 0.211013
Target:  5'- -gGGCGcGCuGCGcuGGGUGGCGAUGCu -3'
miRNA:   3'- aaCCGCuCGuCGU--UCCGCUGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 34044 0.7 0.219101
Target:  5'- --cGUGGGCGGCGauucucgaagauucgAGcGCGGCGGCGCAg -3'
miRNA:   3'- aacCGCUCGUCGU---------------UC-CGCUGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 23655 0.7 0.222648
Target:  5'- -cGGCGGGCAGCAacugcaccAGGCGACccuCGg- -3'
miRNA:   3'- aaCCGCUCGUCGU--------UCCGCUGcu-GCgu -5'
26467 3' -58.5 NC_005357.1 + 4049 0.7 0.222648
Target:  5'- -cGGCGAGCGGC-AGGCcaGCGGCcCAg -3'
miRNA:   3'- aaCCGCUCGUCGuUCCGc-UGCUGcGU- -5'
26467 3' -58.5 NC_005357.1 + 24550 0.7 0.228668
Target:  5'- gUGGuCGcGCAGCGcGGCGAUGGCGa- -3'
miRNA:   3'- aACC-GCuCGUCGUuCCGCUGCUGCgu -5'
26467 3' -58.5 NC_005357.1 + 37071 0.7 0.234824
Target:  5'- -gGGCGcGguGC-AGGCGGCcACGCAg -3'
miRNA:   3'- aaCCGCuCguCGuUCCGCUGcUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 10081 0.7 0.24112
Target:  5'- -cGGCGAccGCAGCGaccuGGGCGGCgguugucggGACGCc -3'
miRNA:   3'- aaCCGCU--CGUCGU----UCCGCUG---------CUGCGu -5'
26467 3' -58.5 NC_005357.1 + 25771 0.7 0.247555
Target:  5'- -gGGCG-GCGGCAAcgauGGCcGCGAUGCGc -3'
miRNA:   3'- aaCCGCuCGUCGUU----CCGcUGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 36888 0.69 0.254132
Target:  5'- gUGGCGGGCgaccugGGCGgaaccuGGGCGGcCGGCGUg -3'
miRNA:   3'- aACCGCUCG------UCGU------UCCGCU-GCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 14613 0.69 0.254132
Target:  5'- --cGCGGGCAGCGcGcGCGAgGACGUg -3'
miRNA:   3'- aacCGCUCGUCGUuC-CGCUgCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 14566 0.69 0.263579
Target:  5'- aUGGCGAGCgcggacacguucuugAGCAGcGGCGcggcCGGCGCc -3'
miRNA:   3'- aACCGCUCG---------------UCGUU-CCGCu---GCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 23578 0.69 0.274724
Target:  5'- -gGuGCGGGCGG-GGGGCGACGAUGg- -3'
miRNA:   3'- aaC-CGCUCGUCgUUCCGCUGCUGCgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.