miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 3' -58.5 NC_005357.1 + 2025 0.67 0.352082
Target:  5'- cUGGCGaAGUcGCGcAGGCGAuagaacaCGGCGCGc -3'
miRNA:   3'- aACCGC-UCGuCGU-UCCGCU-------GCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 3799 0.67 0.344448
Target:  5'- -cGGuCGGGCAGCAugaccAGGCGGuCGgggGCGCc -3'
miRNA:   3'- aaCC-GCUCGUCGU-----UCCGCU-GC---UGCGu -5'
26467 3' -58.5 NC_005357.1 + 4049 0.7 0.222648
Target:  5'- -cGGCGAGCGGC-AGGCcaGCGGCcCAg -3'
miRNA:   3'- aaCCGCUCGUCGuUCCGc-UGCUGcGU- -5'
26467 3' -58.5 NC_005357.1 + 4375 0.69 0.289181
Target:  5'- -aGGCGGaugcGCAGCcAGGCGcCGuCGCGc -3'
miRNA:   3'- aaCCGCU----CGUCGuUCCGCuGCuGCGU- -5'
26467 3' -58.5 NC_005357.1 + 4994 0.67 0.344448
Target:  5'- gUUGGCGAaCAGC-AGGU--CGGCGCAg -3'
miRNA:   3'- -AACCGCUcGUCGuUCCGcuGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 5476 0.67 0.388351
Target:  5'- -cGGCGAGguGUugccgauggGGGGUacGGCGAUGCu -3'
miRNA:   3'- aaCCGCUCguCG---------UUCCG--CUGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 5611 0.73 0.151736
Target:  5'- -cGGCGGGguGCGuuucgcgcguGGCG-CGGCGCAg -3'
miRNA:   3'- aaCCGCUCguCGUu---------CCGCuGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 6181 0.69 0.281157
Target:  5'- -aGGcCGGucuugccGCAGCGuuugcAGGUGACGGCGCGc -3'
miRNA:   3'- aaCC-GCU-------CGUCGU-----UCCGCUGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 6508 0.68 0.32307
Target:  5'- gUUGGCGAGCAGUuucuuGGCGAguuuuucggggucguCGuCGCc -3'
miRNA:   3'- -AACCGCUCGUCGuu---CCGCU---------------GCuGCGu -5'
26467 3' -58.5 NC_005357.1 + 8417 0.67 0.388351
Target:  5'- --aGCGAGCAGUucgcgGGGGCGucgcggaacauCGGCGCGa -3'
miRNA:   3'- aacCGCUCGUCG-----UUCCGCu----------GCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 8519 0.68 0.311975
Target:  5'- -gGGUGGGCcguGGCGuAGGCGAUGAaaCGCu -3'
miRNA:   3'- aaCCGCUCG---UCGU-UCCGCUGCU--GCGu -5'
26467 3' -58.5 NC_005357.1 + 8564 0.78 0.056861
Target:  5'- aUGGCGGGCAGCGacAGGCGcgacACGACGg- -3'
miRNA:   3'- aACCGCUCGUCGU--UCCGC----UGCUGCgu -5'
26467 3' -58.5 NC_005357.1 + 8904 0.67 0.358967
Target:  5'- aUGGCGcuaucGGCGGCGcgcucgauggcuucGGGCGugGACa-- -3'
miRNA:   3'- aACCGC-----UCGUCGU--------------UCCGCugCUGcgu -5'
26467 3' -58.5 NC_005357.1 + 9199 0.67 0.388351
Target:  5'- gUUGGCcugcucGGCGGCGcGGCGcacguucuGCGGCGCGc -3'
miRNA:   3'- -AACCGc-----UCGUCGUuCCGC--------UGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 9319 0.68 0.311975
Target:  5'- cUGGCGGcgcacgucggcGCGGC-GGGCGGCGGCa-- -3'
miRNA:   3'- aACCGCU-----------CGUCGuUCCGCUGCUGcgu -5'
26467 3' -58.5 NC_005357.1 + 10081 0.7 0.24112
Target:  5'- -cGGCGAccGCAGCGaccuGGGCGGCgguugucggGACGCc -3'
miRNA:   3'- aaCCGCU--CGUCGU----UCCGCUG---------CUGCGu -5'
26467 3' -58.5 NC_005357.1 + 10859 0.66 0.413539
Target:  5'- -aGGCGAGCAGCcaAAGgagcacgccuucccGCGAaccgaGGCGCu -3'
miRNA:   3'- aaCCGCUCGUCG--UUC--------------CGCUg----CUGCGu -5'
26467 3' -58.5 NC_005357.1 + 11423 0.66 0.439708
Target:  5'- -cGGCGAGcCGGCGugcaggucgccgauaAGGCG-CGACaccgGCAg -3'
miRNA:   3'- aaCCGCUC-GUCGU---------------UCCGCuGCUG----CGU- -5'
26467 3' -58.5 NC_005357.1 + 12677 0.67 0.370355
Target:  5'- cUGGC-AGCAGcCGAGGCcgaguucuacGGCGugGCc -3'
miRNA:   3'- aACCGcUCGUC-GUUCCG----------CUGCugCGu -5'
26467 3' -58.5 NC_005357.1 + 13527 0.66 0.416399
Target:  5'- -gGGaCGAGUGGUc-GGCGACGGCcaGCAa -3'
miRNA:   3'- aaCC-GCUCGUCGuuCCGCUGCUG--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.