miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 3' -58.5 NC_005357.1 + 41209 0.67 0.361573
Target:  5'- -aGGgGuauCAGCAaugggucgaaaAGGCGACGGCGUAg -3'
miRNA:   3'- aaCCgCuc-GUCGU-----------UCCGCUGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 38583 0.65 0.442673
Target:  5'- -cGGCGAGguGCGcaaAGuGCGcuggauuggucgcaACGGCGCc -3'
miRNA:   3'- aaCCGCUCguCGU---UC-CGC--------------UGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 38550 0.71 0.20484
Target:  5'- -cGGCGAcgGCAGCGcGGCcuacagcGACGGCGCc -3'
miRNA:   3'- aaCCGCU--CGUCGUuCCG-------CUGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 37071 0.7 0.234824
Target:  5'- -gGGCGcGguGC-AGGCGGCcACGCAg -3'
miRNA:   3'- aaCCGCuCguCGuUCCGCUGcUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 36888 0.69 0.254132
Target:  5'- gUGGCGGGCgaccugGGCGgaaccuGGGCGGcCGGCGUg -3'
miRNA:   3'- aACCGCUCG------UCGU------UCCGCU-GCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 35963 0.68 0.304228
Target:  5'- -cGGCGuGCAGUuccuGcGCGACGGCGaCGc -3'
miRNA:   3'- aaCCGCuCGUCGuu--C-CGCUGCUGC-GU- -5'
26467 3' -58.5 NC_005357.1 + 34390 0.68 0.304228
Target:  5'- aUGGaCG-GCGGCAAGGaCGGCGGCc-- -3'
miRNA:   3'- aACC-GCuCGUCGUUCC-GCUGCUGcgu -5'
26467 3' -58.5 NC_005357.1 + 34381 0.66 0.397562
Target:  5'- aUGGuCGAGCAGCGguuGaGCGuCGAgGCu -3'
miRNA:   3'- aACC-GCUCGUCGUu--C-CGCuGCUgCGu -5'
26467 3' -58.5 NC_005357.1 + 34044 0.7 0.219101
Target:  5'- --cGUGGGCGGCGauucucgaagauucgAGcGCGGCGGCGCAg -3'
miRNA:   3'- aacCGCUCGUCGU---------------UC-CGCUGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 31696 1.05 0.00048
Target:  5'- cUUGGCGAGCAGCAAGGCGACGACGCAu -3'
miRNA:   3'- -AACCGCUCGUCGUUCCGCUGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 31111 0.71 0.1842
Target:  5'- -cGGCGAGUggugcgagauAGCGGGgacuuuucagcGCGACGACGCu -3'
miRNA:   3'- aaCCGCUCG----------UCGUUC-----------CGCUGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 29525 0.67 0.360703
Target:  5'- -cGGcCGAGC-GCAucgccaaAGGCGACGACa-- -3'
miRNA:   3'- aaCC-GCUCGuCGU-------UCCGCUGCUGcgu -5'
26467 3' -58.5 NC_005357.1 + 28379 0.67 0.388351
Target:  5'- cUUGGCGAGguGUuccaguucGAcGcCGGCGGCGCGg -3'
miRNA:   3'- -AACCGCUCguCG--------UUcC-GCUGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 26243 0.68 0.327914
Target:  5'- aUGGCGcGUGGCGucGGUGAacucCGACGCGg -3'
miRNA:   3'- aACCGCuCGUCGUu-CCGCU----GCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 25771 0.7 0.247555
Target:  5'- -gGGCG-GCGGCAAcgauGGCcGCGAUGCGc -3'
miRNA:   3'- aaCCGCuCGUCGUU----CCGcUGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 24998 0.66 0.435771
Target:  5'- cUGGCgGGGCcacuGCucaAGGGCGACGugGg- -3'
miRNA:   3'- aACCG-CUCGu---CG---UUCCGCUGCugCgu -5'
26467 3' -58.5 NC_005357.1 + 24837 0.67 0.388351
Target:  5'- aUGGCucGGGCAacgauuGCAGGGUGACGAgauaccCGCu -3'
miRNA:   3'- aACCG--CUCGU------CGUUCCGCUGCU------GCGu -5'
26467 3' -58.5 NC_005357.1 + 24550 0.7 0.228668
Target:  5'- gUGGuCGcGCAGCGcGGCGAUGGCGa- -3'
miRNA:   3'- aACC-GCuCGUCGUuCCGCUGCUGCgu -5'
26467 3' -58.5 NC_005357.1 + 24315 0.73 0.147546
Target:  5'- -cGGCGAGCAGCcgcgggucAGGCGgcagaGCGAUGCc -3'
miRNA:   3'- aaCCGCUCGUCGu-------UCCGC-----UGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 23655 0.7 0.222648
Target:  5'- -cGGCGGGCAGCAacugcaccAGGCGACccuCGg- -3'
miRNA:   3'- aaCCGCUCGUCGU--------UCCGCUGcu-GCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.