miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 3' -58.5 NC_005357.1 + 13558 0.66 0.397562
Target:  5'- --cGCcAGCAGCGAGGaCGugG-CGCGg -3'
miRNA:   3'- aacCGcUCGUCGUUCC-GCugCuGCGU- -5'
26467 3' -58.5 NC_005357.1 + 14566 0.69 0.263579
Target:  5'- aUGGCGAGCgcggacacguucuugAGCAGcGGCGcggcCGGCGCc -3'
miRNA:   3'- aACCGCUCG---------------UCGUU-CCGCu---GCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 14613 0.69 0.254132
Target:  5'- --cGCGGGCAGCGcGcGCGAgGACGUg -3'
miRNA:   3'- aacCGCUCGUCGUuC-CGCUgCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 15144 0.68 0.295879
Target:  5'- cUGGCG-GCGGaugcgccCAGGGCGACGGCu-- -3'
miRNA:   3'- aACCGCuCGUC-------GUUCCGCUGCUGcgu -5'
26467 3' -58.5 NC_005357.1 + 15340 0.67 0.352937
Target:  5'- -cGGUGAGCcGUAGGGUucgGACGuGCGCu -3'
miRNA:   3'- aaCCGCUCGuCGUUCCG---CUGC-UGCGu -5'
26467 3' -58.5 NC_005357.1 + 16179 0.67 0.379282
Target:  5'- -cGGCGGGUgcccguGCcuucGGCGACGcGCGCAa -3'
miRNA:   3'- aaCCGCUCGu-----CGuu--CCGCUGC-UGCGU- -5'
26467 3' -58.5 NC_005357.1 + 16238 0.71 0.1842
Target:  5'- -cGGUGAGCGGCAcgauauGGCGgAUGGCGUu -3'
miRNA:   3'- aaCCGCUCGUCGUu-----CCGC-UGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 17351 0.71 0.211013
Target:  5'- -gGGCGcGCuGCGcuGGGUGGCGAUGCu -3'
miRNA:   3'- aaCCGCuCGuCGU--UCCGCUGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 17676 0.68 0.296631
Target:  5'- -cGGCGGGCugGGCGuAGGCGAa-GCGCc -3'
miRNA:   3'- aaCCGCUCG--UCGU-UCCGCUgcUGCGu -5'
26467 3' -58.5 NC_005357.1 + 17955 0.67 0.370355
Target:  5'- cUGGCGcaggcaAGCAGCAGGuCGuCGGCGUc -3'
miRNA:   3'- aACCGC------UCGUCGUUCcGCuGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 18041 0.67 0.388351
Target:  5'- -cGGCGGGCuGCuuggGGGCcuuacCGGCGCGg -3'
miRNA:   3'- aaCCGCUCGuCGu---UCCGcu---GCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 19424 0.67 0.361573
Target:  5'- -aGGCGcAGCAGCAGGcCGACcAgGCGa -3'
miRNA:   3'- aaCCGC-UCGUCGUUCcGCUGcUgCGU- -5'
26467 3' -58.5 NC_005357.1 + 21621 0.66 0.397562
Target:  5'- gUUGGCGAGCA-UGAGGaacaGGuCGGCGUAg -3'
miRNA:   3'- -AACCGCUCGUcGUUCCg---CU-GCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 21869 0.72 0.179212
Target:  5'- gUGGCucauGAGCAGCAAgcGGgGGCGcCGCAu -3'
miRNA:   3'- aACCG----CUCGUCGUU--CCgCUGCuGCGU- -5'
26467 3' -58.5 NC_005357.1 + 22258 0.66 0.416399
Target:  5'- -aGGCGaAGCcGCAAGGCGcaccCGA-GCAa -3'
miRNA:   3'- aaCCGC-UCGuCGUUCCGCu---GCUgCGU- -5'
26467 3' -58.5 NC_005357.1 + 22694 0.68 0.336107
Target:  5'- -cGGCaaccAGCccaAGCAGGGCGAUG-CGCGg -3'
miRNA:   3'- aaCCGc---UCG---UCGUUCCGCUGCuGCGU- -5'
26467 3' -58.5 NC_005357.1 + 23519 0.69 0.289181
Target:  5'- --cGCGAGCGcGCcuuccAGGCGGCGcACGCGg -3'
miRNA:   3'- aacCGCUCGU-CGu----UCCGCUGC-UGCGU- -5'
26467 3' -58.5 NC_005357.1 + 23578 0.69 0.274724
Target:  5'- -gGuGCGGGCGG-GGGGCGACGAUGg- -3'
miRNA:   3'- aaC-CGCUCGUCgUUCCGCUGCUGCgu -5'
26467 3' -58.5 NC_005357.1 + 23655 0.7 0.222648
Target:  5'- -cGGCGGGCAGCAacugcaccAGGCGACccuCGg- -3'
miRNA:   3'- aaCCGCUCGUCGU--------UCCGCUGcu-GCgu -5'
26467 3' -58.5 NC_005357.1 + 24315 0.73 0.147546
Target:  5'- -cGGCGAGCAGCcgcgggucAGGCGgcagaGCGAUGCc -3'
miRNA:   3'- aaCCGCUCGUCGu-------UCCGC-----UGCUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.