miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 3' -58.5 NC_005357.1 + 24550 0.7 0.228668
Target:  5'- gUGGuCGcGCAGCGcGGCGAUGGCGa- -3'
miRNA:   3'- aACC-GCuCGUCGUuCCGCUGCUGCgu -5'
26467 3' -58.5 NC_005357.1 + 37071 0.7 0.234824
Target:  5'- -gGGCGcGguGC-AGGCGGCcACGCAg -3'
miRNA:   3'- aaCCGCuCguCGuUCCGCUGcUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 25771 0.7 0.247555
Target:  5'- -gGGCG-GCGGCAAcgauGGCcGCGAUGCGc -3'
miRNA:   3'- aaCCGCuCGUCGUU----CCGcUGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 23578 0.69 0.274724
Target:  5'- -gGuGCGGGCGG-GGGGCGACGAUGg- -3'
miRNA:   3'- aaC-CGCUCGUCgUUCCGCUGCUGCgu -5'
26467 3' -58.5 NC_005357.1 + 23519 0.69 0.289181
Target:  5'- --cGCGAGCGcGCcuuccAGGCGGCGcACGCGg -3'
miRNA:   3'- aacCGCUCGU-CGu----UCCGCUGC-UGCGU- -5'
26467 3' -58.5 NC_005357.1 + 15144 0.68 0.295879
Target:  5'- cUGGCG-GCGGaugcgccCAGGGCGACGGCu-- -3'
miRNA:   3'- aACCGCuCGUC-------GUUCCGCUGCUGcgu -5'
26467 3' -58.5 NC_005357.1 + 17676 0.68 0.296631
Target:  5'- -cGGCGGGCugGGCGuAGGCGAa-GCGCc -3'
miRNA:   3'- aaCCGCUCG--UCGU-UCCGCUgcUGCGu -5'
26467 3' -58.5 NC_005357.1 + 35963 0.68 0.304228
Target:  5'- -cGGCGuGCAGUuccuGcGCGACGGCGaCGc -3'
miRNA:   3'- aaCCGCuCGUCGuu--C-CGCUGCUGC-GU- -5'
26467 3' -58.5 NC_005357.1 + 26243 0.68 0.327914
Target:  5'- aUGGCGcGUGGCGucGGUGAacucCGACGCGg -3'
miRNA:   3'- aACCGCuCGUCGUu-CCGCU----GCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 22694 0.68 0.336107
Target:  5'- -cGGCaaccAGCccaAGCAGGGCGAUG-CGCGg -3'
miRNA:   3'- aaCCGc---UCG---UCGUUCCGCUGCuGCGU- -5'
26467 3' -58.5 NC_005357.1 + 3799 0.67 0.344448
Target:  5'- -cGGuCGGGCAGCAugaccAGGCGGuCGgggGCGCc -3'
miRNA:   3'- aaCC-GCUCGUCGU-----UCCGCU-GC---UGCGu -5'
26467 3' -58.5 NC_005357.1 + 4994 0.67 0.344448
Target:  5'- gUUGGCGAaCAGC-AGGU--CGGCGCAg -3'
miRNA:   3'- -AACCGCUcGUCGuUCCGcuGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 29525 0.67 0.360703
Target:  5'- -cGGcCGAGC-GCAucgccaaAGGCGACGACa-- -3'
miRNA:   3'- aaCC-GCUCGuCGU-------UCCGCUGCUGcgu -5'
26467 3' -58.5 NC_005357.1 + 19424 0.67 0.361573
Target:  5'- -aGGCGcAGCAGCAGGcCGACcAgGCGa -3'
miRNA:   3'- aaCCGC-UCGUCGUUCcGCUGcUgCGU- -5'
26467 3' -58.5 NC_005357.1 + 12677 0.67 0.370355
Target:  5'- cUGGC-AGCAGcCGAGGCcgaguucuacGGCGugGCc -3'
miRNA:   3'- aACCGcUCGUC-GUUCCG----------CUGCugCGu -5'
26467 3' -58.5 NC_005357.1 + 17955 0.67 0.370355
Target:  5'- cUGGCGcaggcaAGCAGCAGGuCGuCGGCGUc -3'
miRNA:   3'- aACCGC------UCGUCGUUCcGCuGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 16179 0.67 0.379282
Target:  5'- -cGGCGGGUgcccguGCcuucGGCGACGcGCGCAa -3'
miRNA:   3'- aaCCGCUCGu-----CGuu--CCGCUGC-UGCGU- -5'
26467 3' -58.5 NC_005357.1 + 8417 0.67 0.388351
Target:  5'- --aGCGAGCAGUucgcgGGGGCGucgcggaacauCGGCGCGa -3'
miRNA:   3'- aacCGCUCGUCG-----UUCCGCu----------GCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 13558 0.66 0.397562
Target:  5'- --cGCcAGCAGCGAGGaCGugG-CGCGg -3'
miRNA:   3'- aacCGcUCGUCGUUCC-GCugCuGCGU- -5'
26467 3' -58.5 NC_005357.1 + 10859 0.66 0.413539
Target:  5'- -aGGCGAGCAGCcaAAGgagcacgccuucccGCGAaccgaGGCGCu -3'
miRNA:   3'- aaCCGCUCGUCG--UUC--------------CGCUg----CUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.