Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26467 | 5' | -64.6 | NC_005357.1 | + | 23852 | 0.68 | 0.160281 |
Target: 5'- -aCGGCC-AGGCCGUcaccGCgaGCGCgGCCUc -3' miRNA: 3'- uaGCCGGcUCCGGCA----CG--CGCGaCGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 29762 | 0.68 | 0.153635 |
Target: 5'- cUCGGCUGcugccAGGCgCGUGCGCgagauuucggcauacGCUGUCUc -3' miRNA: 3'- uAGCCGGC-----UCCG-GCACGCG---------------CGACGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 19083 | 0.68 | 0.152013 |
Target: 5'- cAUCGGCggCGAGGCCGUcgaauuGCGCgGCUaCCa -3' miRNA: 3'- -UAGCCG--GCUCCGGCA------CGCG-CGAcGGg -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 18672 | 0.68 | 0.152013 |
Target: 5'- cAUCGGCCcgguGGcGCCGgcaugGCGCuGCUGCgCg -3' miRNA: 3'- -UAGCCGGc---UC-CGGCa----CGCG-CGACGgG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 12211 | 0.68 | 0.152013 |
Target: 5'- gAUC-GCCGAGuG-CGUGCGCGUgcucaaGCCCg -3' miRNA: 3'- -UAGcCGGCUC-CgGCACGCGCGa-----CGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 2573 | 0.69 | 0.140335 |
Target: 5'- -aCGGCCca-GCgCGUGCGCGCgcuugccGCCCu -3' miRNA: 3'- uaGCCGGcucCG-GCACGCGCGa------CGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 29583 | 0.69 | 0.140335 |
Target: 5'- gGUCGGCCGc-GCCcagGCGCGCgguuUGCCa -3' miRNA: 3'- -UAGCCGGCucCGGca-CGCGCG----ACGGg -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 36665 | 0.69 | 0.140335 |
Target: 5'- -aUGGUCaAGGCCcugGCGCacucGCUGCCCg -3' miRNA: 3'- uaGCCGGcUCCGGca-CGCG----CGACGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 16059 | 0.69 | 0.136629 |
Target: 5'- uUCGcGCaCGuGGCCGccGCGCGCgGCgCCg -3' miRNA: 3'- uAGC-CG-GCuCCGGCa-CGCGCGaCG-GG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 32023 | 0.69 | 0.129485 |
Target: 5'- -gUGG-CGAGGCCaucgGCGCGCUGCa- -3' miRNA: 3'- uaGCCgGCUCCGGca--CGCGCGACGgg -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 25286 | 0.69 | 0.129485 |
Target: 5'- cGUCGaauGCCuuGAGGUCGUGCG-GCcgGCCCu -3' miRNA: 3'- -UAGC---CGG--CUCCGGCACGCgCGa-CGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 921 | 0.69 | 0.125366 |
Target: 5'- -gCGGCauugagugucagGGGGCCGaucuguccguccUGCGCGgUGCCCa -3' miRNA: 3'- uaGCCGg-----------CUCCGGC------------ACGCGCgACGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 33578 | 0.69 | 0.122688 |
Target: 5'- -gCGaCCGAGGCCaa-CGCGCUGgCCCg -3' miRNA: 3'- uaGCcGGCUCCGGcacGCGCGAC-GGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 14729 | 0.7 | 0.119415 |
Target: 5'- -gCGaGCCGcuGCCG-GCGCGCgGCCUg -3' miRNA: 3'- uaGC-CGGCucCGGCaCGCGCGaCGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 14935 | 0.7 | 0.118449 |
Target: 5'- -gCGGCCGAGGCCGccggcauccucgcgUggugcguggcgGCGCGCUGgCa -3' miRNA: 3'- uaGCCGGCUCCGGC--------------A-----------CGCGCGACgGg -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 32420 | 0.71 | 0.101427 |
Target: 5'- --gGGCgGGGGCCGgGCGCGCgGCaCUu -3' miRNA: 3'- uagCCGgCUCCGGCaCGCGCGaCG-GG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 18563 | 0.71 | 0.093421 |
Target: 5'- cGUCGGUgGAGGCCGcGCuCGCggugacgGCCUg -3' miRNA: 3'- -UAGCCGgCUCCGGCaCGcGCGa------CGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 17989 | 0.71 | 0.08842 |
Target: 5'- uGUC-GCCGAGGCC--GCGCGCgGCaCCg -3' miRNA: 3'- -UAGcCGGCUCCGGcaCGCGCGaCG-GG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 7880 | 0.71 | 0.086016 |
Target: 5'- uUCGGCCGAuGGUCGgGaaaUGCUGCCCu -3' miRNA: 3'- uAGCCGGCU-CCGGCaCgc-GCGACGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 17689 | 0.72 | 0.074902 |
Target: 5'- cAUgGGUCGAGGCCGcGCagGCGCgguggaagcgGCCCg -3' miRNA: 3'- -UAgCCGGCUCCGGCaCG--CGCGa---------CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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