miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 5' -64.6 NC_005357.1 + 14996 0.67 0.202685
Target:  5'- --gGGCCuGcGGCCGccggGCGCGgUGCgCCa -3'
miRNA:   3'- uagCCGG-CuCCGGCa---CGCGCgACG-GG- -5'
26467 5' -64.6 NC_005357.1 + 8573 0.67 0.19753
Target:  5'- cUgGGCguCGuAGGCCGcGCGUGCgGCCUg -3'
miRNA:   3'- uAgCCG--GC-UCCGGCaCGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 41618 0.67 0.19753
Target:  5'- uUCGGCaaGGGCUGggcgcgGCGCGUcGCCg -3'
miRNA:   3'- uAGCCGgcUCCGGCa-----CGCGCGaCGGg -5'
26467 5' -64.6 NC_005357.1 + 16164 0.67 0.19249
Target:  5'- -gCGaGCCGAccaGGCCG-GCG-GgUGCCCg -3'
miRNA:   3'- uaGC-CGGCU---CCGGCaCGCgCgACGGG- -5'
26467 5' -64.6 NC_005357.1 + 23590 0.67 0.187563
Target:  5'- --gGGCgaCGAuGGCCGUcauGCGUGCaGCCCc -3'
miRNA:   3'- uagCCG--GCU-CCGGCA---CGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 34802 0.67 0.187563
Target:  5'- --aGGCCaAGGCCacGUGUccgGCGCUGCgCg -3'
miRNA:   3'- uagCCGGcUCCGG--CACG---CGCGACGgG- -5'
26467 5' -64.6 NC_005357.1 + 25776 0.67 0.187563
Target:  5'- -gCGGCaaCGAuGGCCGcgaUGCGCGCggcgcGCUCg -3'
miRNA:   3'- uaGCCG--GCU-CCGGC---ACGCGCGa----CGGG- -5'
26467 5' -64.6 NC_005357.1 + 28628 0.67 0.182748
Target:  5'- -gCGGauGAGGCCGgccaguuccGCGCGCagUGCCa -3'
miRNA:   3'- uaGCCggCUCCGGCa--------CGCGCG--ACGGg -5'
26467 5' -64.6 NC_005357.1 + 35857 0.67 0.179912
Target:  5'- -cUGGCCGAGGCgGauggcaagcccuacGCGgGCUGCUa -3'
miRNA:   3'- uaGCCGGCUCCGgCa-------------CGCgCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 27797 0.67 0.179912
Target:  5'- -gCGcGCCGcgcaGCCGcagcacguccucgcGCGCGCUGCCCg -3'
miRNA:   3'- uaGC-CGGCuc--CGGCa-------------CGCGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 4552 0.67 0.178042
Target:  5'- uUgGGCuUGAGGCCGaagucGCcgagGCGCUGCUCg -3'
miRNA:   3'- uAgCCG-GCUCCGGCa----CG----CGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 17343 0.67 0.178042
Target:  5'- -aCGGCgCcGGGCgCGcUGCGCuggguggcgauGCUGCCCg -3'
miRNA:   3'- uaGCCG-GcUCCG-GC-ACGCG-----------CGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 428 0.67 0.178042
Target:  5'- cGUCGGCCGuaccuugucguuGGGCUGcUGCGCG--GCCa -3'
miRNA:   3'- -UAGCCGGC------------UCCGGC-ACGCGCgaCGGg -5'
26467 5' -64.6 NC_005357.1 + 22211 0.67 0.173444
Target:  5'- --aGGCCaacagccGGCCGcGgGCGCUGCCa -3'
miRNA:   3'- uagCCGGcu-----CCGGCaCgCGCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 35381 0.68 0.168953
Target:  5'- -cCGcCCGAGGCCaUGCGC-CUGCUg -3'
miRNA:   3'- uaGCcGGCUCCGGcACGCGcGACGGg -5'
26467 5' -64.6 NC_005357.1 + 29086 0.68 0.168953
Target:  5'- cUCGggcGCCGAGGucaggcCCGUGCGggacuUGCUGCCg -3'
miRNA:   3'- uAGC---CGGCUCC------GGCACGC-----GCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 22068 0.68 0.168953
Target:  5'- cUCgGGUCGcGGUCG-GCGCGCgGCUCg -3'
miRNA:   3'- uAG-CCGGCuCCGGCaCGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 24584 0.68 0.164566
Target:  5'- -aCGGUCG-GGCCGUccgGCGUGUccuUGCCg -3'
miRNA:   3'- uaGCCGGCuCCGGCA---CGCGCG---ACGGg -5'
26467 5' -64.6 NC_005357.1 + 23962 0.68 0.164566
Target:  5'- aAUCGGCCGAcGCCGccgGCGcCGCga-CCg -3'
miRNA:   3'- -UAGCCGGCUcCGGCa--CGC-GCGacgGG- -5'
26467 5' -64.6 NC_005357.1 + 34563 0.68 0.160281
Target:  5'- cAUCGGCCGAaGCC-UGaacCGCGaaGCCCg -3'
miRNA:   3'- -UAGCCGGCUcCGGcAC---GCGCgaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.