miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 5' -64.6 NC_005357.1 + 16059 0.69 0.136629
Target:  5'- uUCGcGCaCGuGGCCGccGCGCGCgGCgCCg -3'
miRNA:   3'- uAGC-CG-GCuCCGGCa-CGCGCGaCG-GG- -5'
26467 5' -64.6 NC_005357.1 + 2573 0.69 0.140335
Target:  5'- -aCGGCCca-GCgCGUGCGCGCgcuugccGCCCu -3'
miRNA:   3'- uaGCCGGcucCG-GCACGCGCGa------CGGG- -5'
26467 5' -64.6 NC_005357.1 + 36665 0.69 0.140335
Target:  5'- -aUGGUCaAGGCCcugGCGCacucGCUGCCCg -3'
miRNA:   3'- uaGCCGGcUCCGGca-CGCG----CGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 29583 0.69 0.140335
Target:  5'- gGUCGGCCGc-GCCcagGCGCGCgguuUGCCa -3'
miRNA:   3'- -UAGCCGGCucCGGca-CGCGCG----ACGGg -5'
26467 5' -64.6 NC_005357.1 + 19083 0.68 0.152013
Target:  5'- cAUCGGCggCGAGGCCGUcgaauuGCGCgGCUaCCa -3'
miRNA:   3'- -UAGCCG--GCUCCGGCA------CGCG-CGAcGGg -5'
26467 5' -64.6 NC_005357.1 + 18672 0.68 0.152013
Target:  5'- cAUCGGCCcgguGGcGCCGgcaugGCGCuGCUGCgCg -3'
miRNA:   3'- -UAGCCGGc---UC-CGGCa----CGCG-CGACGgG- -5'
26467 5' -64.6 NC_005357.1 + 12211 0.68 0.152013
Target:  5'- gAUC-GCCGAGuG-CGUGCGCGUgcucaaGCCCg -3'
miRNA:   3'- -UAGcCGGCUC-CgGCACGCGCGa-----CGGG- -5'
26467 5' -64.6 NC_005357.1 + 29762 0.68 0.153635
Target:  5'- cUCGGCUGcugccAGGCgCGUGCGCgagauuucggcauacGCUGUCUc -3'
miRNA:   3'- uAGCCGGC-----UCCG-GCACGCG---------------CGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 34563 0.68 0.160281
Target:  5'- cAUCGGCCGAaGCC-UGaacCGCGaaGCCCg -3'
miRNA:   3'- -UAGCCGGCUcCGGcAC---GCGCgaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 23852 0.68 0.160281
Target:  5'- -aCGGCC-AGGCCGUcaccGCgaGCGCgGCCUc -3'
miRNA:   3'- uaGCCGGcUCCGGCA----CG--CGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 23962 0.68 0.164566
Target:  5'- aAUCGGCCGAcGCCGccgGCGcCGCga-CCg -3'
miRNA:   3'- -UAGCCGGCUcCGGCa--CGC-GCGacgGG- -5'
26467 5' -64.6 NC_005357.1 + 24584 0.68 0.164566
Target:  5'- -aCGGUCG-GGCCGUccgGCGUGUccuUGCCg -3'
miRNA:   3'- uaGCCGGCuCCGGCA---CGCGCG---ACGGg -5'
26467 5' -64.6 NC_005357.1 + 22068 0.68 0.168953
Target:  5'- cUCgGGUCGcGGUCG-GCGCGCgGCUCg -3'
miRNA:   3'- uAG-CCGGCuCCGGCaCGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 29086 0.68 0.168953
Target:  5'- cUCGggcGCCGAGGucaggcCCGUGCGggacuUGCUGCCg -3'
miRNA:   3'- uAGC---CGGCUCC------GGCACGC-----GCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 35381 0.68 0.168953
Target:  5'- -cCGcCCGAGGCCaUGCGC-CUGCUg -3'
miRNA:   3'- uaGCcGGCUCCGGcACGCGcGACGGg -5'
26467 5' -64.6 NC_005357.1 + 22211 0.67 0.173444
Target:  5'- --aGGCCaacagccGGCCGcGgGCGCUGCCa -3'
miRNA:   3'- uagCCGGcu-----CCGGCaCgCGCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 428 0.67 0.178042
Target:  5'- cGUCGGCCGuaccuugucguuGGGCUGcUGCGCG--GCCa -3'
miRNA:   3'- -UAGCCGGC------------UCCGGC-ACGCGCgaCGGg -5'
26467 5' -64.6 NC_005357.1 + 17343 0.67 0.178042
Target:  5'- -aCGGCgCcGGGCgCGcUGCGCuggguggcgauGCUGCCCg -3'
miRNA:   3'- uaGCCG-GcUCCG-GC-ACGCG-----------CGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 4552 0.67 0.178042
Target:  5'- uUgGGCuUGAGGCCGaagucGCcgagGCGCUGCUCg -3'
miRNA:   3'- uAgCCG-GCUCCGGCa----CG----CGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 35857 0.67 0.179912
Target:  5'- -cUGGCCGAGGCgGauggcaagcccuacGCGgGCUGCUa -3'
miRNA:   3'- uaGCCGGCUCCGgCa-------------CGCgCGACGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.