miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 5' -64.6 NC_005357.1 + 31730 1.04 0.000216
Target:  5'- aAUCGGCCGAGGCCGUGCGCGCUGCCg -3'
miRNA:   3'- -UAGCCGGCUCCGGCACGCGCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 31028 0.8 0.017405
Target:  5'- -cCGGCCGAGGCaaucgcgcgggccaaCGUGCGCGaagGCCCg -3'
miRNA:   3'- uaGCCGGCUCCG---------------GCACGCGCga-CGGG- -5'
26467 5' -64.6 NC_005357.1 + 8410 0.79 0.022898
Target:  5'- aGUCGGCCaGGGCCGUGCGC-UUGUCUa -3'
miRNA:   3'- -UAGCCGGcUCCGGCACGCGcGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 18885 0.78 0.024943
Target:  5'- uGUCGGCCGAGGCCaucgaccgcGUGCGCcGCCUg -3'
miRNA:   3'- -UAGCCGGCUCCGGca-------CGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 8294 0.74 0.054486
Target:  5'- -gCuGCCGGGGCagugcagccagcgGUGCGCGCUGCUCg -3'
miRNA:   3'- uaGcCGGCUCCGg------------CACGCGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 12023 0.73 0.070853
Target:  5'- -gCGGCCGuGGCCG-GCGagGUcuUGCCCa -3'
miRNA:   3'- uaGCCGGCuCCGGCaCGCg-CG--ACGGG- -5'
26467 5' -64.6 NC_005357.1 + 33645 0.73 0.070853
Target:  5'- -gCGGCCGAcccaUCGUGCGCcgcguGCUGCCCg -3'
miRNA:   3'- uaGCCGGCUcc--GGCACGCG-----CGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 29392 0.72 0.073664
Target:  5'- cUCGGCgCGguAGGCCagcagaaucuuggGCGCGUUGCCCa -3'
miRNA:   3'- uAGCCG-GC--UCCGGca-----------CGCGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 35702 0.72 0.074902
Target:  5'- --aGGCCGAcGCCGUGCucaagcagauGCGC-GCCCa -3'
miRNA:   3'- uagCCGGCUcCGGCACG----------CGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 17689 0.72 0.074902
Target:  5'- cAUgGGUCGAGGCCGcGCagGCGCgguggaagcgGCCCg -3'
miRNA:   3'- -UAgCCGGCUCCGGCaCG--CGCGa---------CGGG- -5'
26467 5' -64.6 NC_005357.1 + 7880 0.71 0.086016
Target:  5'- uUCGGCCGAuGGUCGgGaaaUGCUGCCCu -3'
miRNA:   3'- uAGCCGGCU-CCGGCaCgc-GCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 17989 0.71 0.08842
Target:  5'- uGUC-GCCGAGGCC--GCGCGCgGCaCCg -3'
miRNA:   3'- -UAGcCGGCUCCGGcaCGCGCGaCG-GG- -5'
26467 5' -64.6 NC_005357.1 + 18563 0.71 0.093421
Target:  5'- cGUCGGUgGAGGCCGcGCuCGCggugacgGCCUg -3'
miRNA:   3'- -UAGCCGgCUCCGGCaCGcGCGa------CGGG- -5'
26467 5' -64.6 NC_005357.1 + 32420 0.71 0.101427
Target:  5'- --gGGCgGGGGCCGgGCGCGCgGCaCUu -3'
miRNA:   3'- uagCCGgCUCCGGCaCGCGCGaCG-GG- -5'
26467 5' -64.6 NC_005357.1 + 14935 0.7 0.118449
Target:  5'- -gCGGCCGAGGCCGccggcauccucgcgUggugcguggcgGCGCGCUGgCa -3'
miRNA:   3'- uaGCCGGCUCCGGC--------------A-----------CGCGCGACgGg -5'
26467 5' -64.6 NC_005357.1 + 14729 0.7 0.119415
Target:  5'- -gCGaGCCGcuGCCG-GCGCGCgGCCUg -3'
miRNA:   3'- uaGC-CGGCucCGGCaCGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 33578 0.69 0.122688
Target:  5'- -gCGaCCGAGGCCaa-CGCGCUGgCCCg -3'
miRNA:   3'- uaGCcGGCUCCGGcacGCGCGAC-GGG- -5'
26467 5' -64.6 NC_005357.1 + 921 0.69 0.125366
Target:  5'- -gCGGCauugagugucagGGGGCCGaucuguccguccUGCGCGgUGCCCa -3'
miRNA:   3'- uaGCCGg-----------CUCCGGC------------ACGCGCgACGGG- -5'
26467 5' -64.6 NC_005357.1 + 25286 0.69 0.129485
Target:  5'- cGUCGaauGCCuuGAGGUCGUGCG-GCcgGCCCu -3'
miRNA:   3'- -UAGC---CGG--CUCCGGCACGCgCGa-CGGG- -5'
26467 5' -64.6 NC_005357.1 + 32023 0.69 0.129485
Target:  5'- -gUGG-CGAGGCCaucgGCGCGCUGCa- -3'
miRNA:   3'- uaGCCgGCUCCGGca--CGCGCGACGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.