miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 5' -64.6 NC_005357.1 + 28628 0.67 0.182748
Target:  5'- -gCGGauGAGGCCGgccaguuccGCGCGCagUGCCa -3'
miRNA:   3'- uaGCCggCUCCGGCa--------CGCGCG--ACGGg -5'
26467 5' -64.6 NC_005357.1 + 29762 0.68 0.153635
Target:  5'- cUCGGCUGcugccAGGCgCGUGCGCgagauuucggcauacGCUGUCUc -3'
miRNA:   3'- uAGCCGGC-----UCCG-GCACGCG---------------CGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 24584 0.68 0.164566
Target:  5'- -aCGGUCG-GGCCGUccgGCGUGUccuUGCCg -3'
miRNA:   3'- uaGCCGGCuCCGGCA---CGCGCG---ACGGg -5'
26467 5' -64.6 NC_005357.1 + 22068 0.68 0.168953
Target:  5'- cUCgGGUCGcGGUCG-GCGCGCgGCUCg -3'
miRNA:   3'- uAG-CCGGCuCCGGCaCGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 29086 0.68 0.168953
Target:  5'- cUCGggcGCCGAGGucaggcCCGUGCGggacuUGCUGCCg -3'
miRNA:   3'- uAGC---CGGCUCC------GGCACGC-----GCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 35381 0.68 0.168953
Target:  5'- -cCGcCCGAGGCCaUGCGC-CUGCUg -3'
miRNA:   3'- uaGCcGGCUCCGGcACGCGcGACGGg -5'
26467 5' -64.6 NC_005357.1 + 428 0.67 0.178042
Target:  5'- cGUCGGCCGuaccuugucguuGGGCUGcUGCGCG--GCCa -3'
miRNA:   3'- -UAGCCGGC------------UCCGGC-ACGCGCgaCGGg -5'
26467 5' -64.6 NC_005357.1 + 27797 0.67 0.179912
Target:  5'- -gCGcGCCGcgcaGCCGcagcacguccucgcGCGCGCUGCCCg -3'
miRNA:   3'- uaGC-CGGCuc--CGGCa-------------CGCGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 35857 0.67 0.179912
Target:  5'- -cUGGCCGAGGCgGauggcaagcccuacGCGgGCUGCUa -3'
miRNA:   3'- uaGCCGGCUCCGgCa-------------CGCgCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 36665 0.69 0.140335
Target:  5'- -aUGGUCaAGGCCcugGCGCacucGCUGCCCg -3'
miRNA:   3'- uaGCCGGcUCCGGca-CGCG----CGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 29583 0.69 0.140335
Target:  5'- gGUCGGCCGc-GCCcagGCGCGCgguuUGCCa -3'
miRNA:   3'- -UAGCCGGCucCGGca-CGCGCG----ACGGg -5'
26467 5' -64.6 NC_005357.1 + 16059 0.69 0.136629
Target:  5'- uUCGcGCaCGuGGCCGccGCGCGCgGCgCCg -3'
miRNA:   3'- uAGC-CG-GCuCCGGCa-CGCGCGaCG-GG- -5'
26467 5' -64.6 NC_005357.1 + 8410 0.79 0.022898
Target:  5'- aGUCGGCCaGGGCCGUGCGC-UUGUCUa -3'
miRNA:   3'- -UAGCCGGcUCCGGCACGCGcGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 12023 0.73 0.070853
Target:  5'- -gCGGCCGuGGCCG-GCGagGUcuUGCCCa -3'
miRNA:   3'- uaGCCGGCuCCGGCaCGCg-CG--ACGGG- -5'
26467 5' -64.6 NC_005357.1 + 29392 0.72 0.073664
Target:  5'- cUCGGCgCGguAGGCCagcagaaucuuggGCGCGUUGCCCa -3'
miRNA:   3'- uAGCCG-GC--UCCGGca-----------CGCGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 35702 0.72 0.074902
Target:  5'- --aGGCCGAcGCCGUGCucaagcagauGCGC-GCCCa -3'
miRNA:   3'- uagCCGGCUcCGGCACG----------CGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 7880 0.71 0.086016
Target:  5'- uUCGGCCGAuGGUCGgGaaaUGCUGCCCu -3'
miRNA:   3'- uAGCCGGCU-CCGGCaCgc-GCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 18563 0.71 0.093421
Target:  5'- cGUCGGUgGAGGCCGcGCuCGCggugacgGCCUg -3'
miRNA:   3'- -UAGCCGgCUCCGGCaCGcGCGa------CGGG- -5'
26467 5' -64.6 NC_005357.1 + 921 0.69 0.125366
Target:  5'- -gCGGCauugagugucagGGGGCCGaucuguccguccUGCGCGgUGCCCa -3'
miRNA:   3'- uaGCCGg-----------CUCCGGC------------ACGCGCgACGGG- -5'
26467 5' -64.6 NC_005357.1 + 25286 0.69 0.129485
Target:  5'- cGUCGaauGCCuuGAGGUCGUGCG-GCcgGCCCu -3'
miRNA:   3'- -UAGC---CGG--CUCCGGCACGCgCGa-CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.