miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 5' -64.6 NC_005357.1 + 428 0.67 0.178042
Target:  5'- cGUCGGCCGuaccuugucguuGGGCUGcUGCGCG--GCCa -3'
miRNA:   3'- -UAGCCGGC------------UCCGGC-ACGCGCgaCGGg -5'
26467 5' -64.6 NC_005357.1 + 921 0.69 0.125366
Target:  5'- -gCGGCauugagugucagGGGGCCGaucuguccguccUGCGCGgUGCCCa -3'
miRNA:   3'- uaGCCGg-----------CUCCGGC------------ACGCGCgACGGG- -5'
26467 5' -64.6 NC_005357.1 + 2573 0.69 0.140335
Target:  5'- -aCGGCCca-GCgCGUGCGCGCgcuugccGCCCu -3'
miRNA:   3'- uaGCCGGcucCG-GCACGCGCGa------CGGG- -5'
26467 5' -64.6 NC_005357.1 + 2722 0.66 0.23611
Target:  5'- cGUUGGCCGGacgcuugagcgcGGCCcg--GCGCUGCUCg -3'
miRNA:   3'- -UAGCCGGCU------------CCGGcacgCGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 4360 0.66 0.213344
Target:  5'- aAUCGGCCGgacggcAGGCgGaUGCGCaGCcagGCgCCg -3'
miRNA:   3'- -UAGCCGGC------UCCGgC-ACGCG-CGa--CG-GG- -5'
26467 5' -64.6 NC_005357.1 + 4552 0.67 0.178042
Target:  5'- uUgGGCuUGAGGCCGaagucGCcgagGCGCUGCUCg -3'
miRNA:   3'- uAgCCG-GCUCCGGCa----CG----CGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 7880 0.71 0.086016
Target:  5'- uUCGGCCGAuGGUCGgGaaaUGCUGCCCu -3'
miRNA:   3'- uAGCCGGCU-CCGGCaCgc-GCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 8217 0.66 0.207955
Target:  5'- -gCGGCC-AGuuCGUGCGCGgCcgUGCCCu -3'
miRNA:   3'- uaGCCGGcUCcgGCACGCGC-G--ACGGG- -5'
26467 5' -64.6 NC_005357.1 + 8294 0.74 0.054486
Target:  5'- -gCuGCCGGGGCagugcagccagcgGUGCGCGCUGCUCg -3'
miRNA:   3'- uaGcCGGCUCCGg------------CACGCGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 8410 0.79 0.022898
Target:  5'- aGUCGGCCaGGGCCGUGCGC-UUGUCUa -3'
miRNA:   3'- -UAGCCGGcUCCGGCACGCGcGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 8573 0.67 0.19753
Target:  5'- cUgGGCguCGuAGGCCGcGCGUGCgGCCUg -3'
miRNA:   3'- uAgCCG--GC-UCCGGCaCGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 10708 0.66 0.213344
Target:  5'- -aCGGCCucGGCCGauugcuugaaUGCGUcgucgccuuGCUGCUCg -3'
miRNA:   3'- uaGCCGGcuCCGGC----------ACGCG---------CGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 12023 0.73 0.070853
Target:  5'- -gCGGCCGuGGCCG-GCGagGUcuUGCCCa -3'
miRNA:   3'- uaGCCGGCuCCGGCaCGCg-CG--ACGGG- -5'
26467 5' -64.6 NC_005357.1 + 12211 0.68 0.152013
Target:  5'- gAUC-GCCGAGuG-CGUGCGCGUgcucaaGCCCg -3'
miRNA:   3'- -UAGcCGGCUC-CgGCACGCGCGa-----CGGG- -5'
26467 5' -64.6 NC_005357.1 + 12456 0.66 0.213344
Target:  5'- -aCGGCUGcauccAGGCCGUcGUGCGCcGCg- -3'
miRNA:   3'- uaGCCGGC-----UCCGGCA-CGCGCGaCGgg -5'
26467 5' -64.6 NC_005357.1 + 13165 0.66 0.213344
Target:  5'- uGUCGGCC-AGuGUCG-GcCGCGCUgggcGCCCu -3'
miRNA:   3'- -UAGCCGGcUC-CGGCaC-GCGCGA----CGGG- -5'
26467 5' -64.6 NC_005357.1 + 13642 0.66 0.206362
Target:  5'- gAUCGGCaaccagggcaagcgCGAcGCCGUGCGCGCcgagaagcGCaCCg -3'
miRNA:   3'- -UAGCCG--------------GCUcCGGCACGCGCGa-------CG-GG- -5'
26467 5' -64.6 NC_005357.1 + 14133 0.66 0.228496
Target:  5'- cGUCGGCCagcggcuugccuuccGGCCGUuccaGCGCGUUGauaCCCu -3'
miRNA:   3'- -UAGCCGGcu-------------CCGGCA----CGCGCGAC---GGG- -5'
26467 5' -64.6 NC_005357.1 + 14729 0.7 0.119415
Target:  5'- -gCGaGCCGcuGCCG-GCGCGCgGCCUg -3'
miRNA:   3'- uaGC-CGGCucCGGCaCGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 14935 0.7 0.118449
Target:  5'- -gCGGCCGAGGCCGccggcauccucgcgUggugcguggcgGCGCGCUGgCa -3'
miRNA:   3'- uaGCCGGCUCCGGC--------------A-----------CGCGCGACgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.