miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 5' -64.6 NC_005357.1 + 41618 0.67 0.19753
Target:  5'- uUCGGCaaGGGCUGggcgcgGCGCGUcGCCg -3'
miRNA:   3'- uAGCCGgcUCCGGCa-----CGCGCGaCGGg -5'
26467 5' -64.6 NC_005357.1 + 41596 0.66 0.23611
Target:  5'- gGUCGGCUc--GCUGUcucugcGCGCGCUcaaGCCCa -3'
miRNA:   3'- -UAGCCGGcucCGGCA------CGCGCGA---CGGG- -5'
26467 5' -64.6 NC_005357.1 + 41307 0.66 0.23611
Target:  5'- -aCGGuuacaCCG-GGCCGaUGCGCGacaUGCCg -3'
miRNA:   3'- uaGCC-----GGCuCCGGC-ACGCGCg--ACGGg -5'
26467 5' -64.6 NC_005357.1 + 39991 0.66 0.230234
Target:  5'- -gUGGCgccgaucuuCGAGGCCG-GCcUGCUGCCg -3'
miRNA:   3'- uaGCCG---------GCUCCGGCaCGcGCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 36665 0.69 0.140335
Target:  5'- -aUGGUCaAGGCCcugGCGCacucGCUGCCCg -3'
miRNA:   3'- uaGCCGGcUCCGGca-CGCG----CGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 35857 0.67 0.179912
Target:  5'- -cUGGCCGAGGCgGauggcaagcccuacGCGgGCUGCUa -3'
miRNA:   3'- uaGCCGGCUCCGgCa-------------CGCgCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 35702 0.72 0.074902
Target:  5'- --aGGCCGAcGCCGUGCucaagcagauGCGC-GCCCa -3'
miRNA:   3'- uagCCGGCUcCGGCACG----------CGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 35381 0.68 0.168953
Target:  5'- -cCGcCCGAGGCCaUGCGC-CUGCUg -3'
miRNA:   3'- uaGCcGGCUCCGGcACGCGcGACGGg -5'
26467 5' -64.6 NC_005357.1 + 34802 0.67 0.187563
Target:  5'- --aGGCCaAGGCCacGUGUccgGCGCUGCgCg -3'
miRNA:   3'- uagCCGGcUCCGG--CACG---CGCGACGgG- -5'
26467 5' -64.6 NC_005357.1 + 34563 0.68 0.160281
Target:  5'- cAUCGGCCGAaGCC-UGaacCGCGaaGCCCg -3'
miRNA:   3'- -UAGCCGGCUcCGGcAC---GCGCgaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 34473 0.66 0.23611
Target:  5'- -gCGcGCCGAGGCCacggGCaaGCUGUCg -3'
miRNA:   3'- uaGC-CGGCUCCGGca--CGcgCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 34438 0.66 0.213344
Target:  5'- -aCGuCCGAcGCCGUgGUGCuGCUGCCUg -3'
miRNA:   3'- uaGCcGGCUcCGGCA-CGCG-CGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 34224 0.66 0.213344
Target:  5'- -gCGcGacuaCGAGGCCGUGCGCGaugaaaucGCCg -3'
miRNA:   3'- uaGC-Cg---GCUCCGGCACGCGCga------CGGg -5'
26467 5' -64.6 NC_005357.1 + 33645 0.73 0.070853
Target:  5'- -gCGGCCGAcccaUCGUGCGCcgcguGCUGCCCg -3'
miRNA:   3'- uaGCCGGCUcc--GGCACGCG-----CGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 33578 0.69 0.122688
Target:  5'- -gCGaCCGAGGCCaa-CGCGCUGgCCCg -3'
miRNA:   3'- uaGCcGGCUCCGGcacGCGCGAC-GGG- -5'
26467 5' -64.6 NC_005357.1 + 32420 0.71 0.101427
Target:  5'- --gGGCgGGGGCCGgGCGCGCgGCaCUu -3'
miRNA:   3'- uagCCGgCUCCGGCaCGCGCGaCG-GG- -5'
26467 5' -64.6 NC_005357.1 + 32023 0.69 0.129485
Target:  5'- -gUGG-CGAGGCCaucgGCGCGCUGCa- -3'
miRNA:   3'- uaGCCgGCUCCGGca--CGCGCGACGgg -5'
26467 5' -64.6 NC_005357.1 + 31730 1.04 0.000216
Target:  5'- aAUCGGCCGAGGCCGUGCGCGCUGCCg -3'
miRNA:   3'- -UAGCCGGCUCCGGCACGCGCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 31258 0.66 0.230234
Target:  5'- -aCGGCCGAccaGCgcacgcaaCGUGCGCagGCgGCCCa -3'
miRNA:   3'- uaGCCGGCUc--CG--------GCACGCG--CGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 31208 0.66 0.218853
Target:  5'- -aCGGUCGAGGgCGaaagcaUgaagaaccccgGCGCGCgGCCCa -3'
miRNA:   3'- uaGCCGGCUCCgGC------A-----------CGCGCGaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.