miRNA display CGI


Results 21 - 40 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 5' -64.6 NC_005357.1 + 14996 0.67 0.202685
Target:  5'- --gGGCCuGcGGCCGccggGCGCGgUGCgCCa -3'
miRNA:   3'- uagCCGG-CuCCGGCa---CGCGCgACG-GG- -5'
26467 5' -64.6 NC_005357.1 + 16059 0.69 0.136629
Target:  5'- uUCGcGCaCGuGGCCGccGCGCGCgGCgCCg -3'
miRNA:   3'- uAGC-CG-GCuCCGGCa-CGCGCGaCG-GG- -5'
26467 5' -64.6 NC_005357.1 + 16164 0.67 0.19249
Target:  5'- -gCGaGCCGAccaGGCCG-GCG-GgUGCCCg -3'
miRNA:   3'- uaGC-CGGCU---CCGGCaCGCgCgACGGG- -5'
26467 5' -64.6 NC_005357.1 + 17343 0.67 0.178042
Target:  5'- -aCGGCgCcGGGCgCGcUGCGCuggguggcgauGCUGCCCg -3'
miRNA:   3'- uaGCCG-GcUCCG-GC-ACGCG-----------CGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 17689 0.72 0.074902
Target:  5'- cAUgGGUCGAGGCCGcGCagGCGCgguggaagcgGCCCg -3'
miRNA:   3'- -UAgCCGGCUCCGGCaCG--CGCGa---------CGGG- -5'
26467 5' -64.6 NC_005357.1 + 17989 0.71 0.08842
Target:  5'- uGUC-GCCGAGGCC--GCGCGCgGCaCCg -3'
miRNA:   3'- -UAGcCGGCUCCGGcaCGCGCGaCG-GG- -5'
26467 5' -64.6 NC_005357.1 + 18563 0.71 0.093421
Target:  5'- cGUCGGUgGAGGCCGcGCuCGCggugacgGCCUg -3'
miRNA:   3'- -UAGCCGgCUCCGGCaCGcGCGa------CGGG- -5'
26467 5' -64.6 NC_005357.1 + 18672 0.68 0.152013
Target:  5'- cAUCGGCCcgguGGcGCCGgcaugGCGCuGCUGCgCg -3'
miRNA:   3'- -UAGCCGGc---UC-CGGCa----CGCG-CGACGgG- -5'
26467 5' -64.6 NC_005357.1 + 18885 0.78 0.024943
Target:  5'- uGUCGGCCGAGGCCaucgaccgcGUGCGCcGCCUg -3'
miRNA:   3'- -UAGCCGGCUCCGGca-------CGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 19083 0.68 0.152013
Target:  5'- cAUCGGCggCGAGGCCGUcgaauuGCGCgGCUaCCa -3'
miRNA:   3'- -UAGCCG--GCUCCGGCA------CGCG-CGAcGGg -5'
26467 5' -64.6 NC_005357.1 + 20113 0.66 0.230234
Target:  5'- uUCGGCac-GGCCagcagcauCGUGCUGCCCg -3'
miRNA:   3'- uAGCCGgcuCCGGcac-----GCGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 20259 0.66 0.207955
Target:  5'- gGUCGGCUGuugcugcuguuGGCCGU---CGUUGCCCg -3'
miRNA:   3'- -UAGCCGGCu----------CCGGCAcgcGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 22068 0.68 0.168953
Target:  5'- cUCgGGUCGcGGUCG-GCGCGCgGCUCg -3'
miRNA:   3'- uAG-CCGGCuCCGGCaCGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 22211 0.67 0.173444
Target:  5'- --aGGCCaacagccGGCCGcGgGCGCUGCCa -3'
miRNA:   3'- uagCCGGcu-----CCGGCaCgCGCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 23590 0.67 0.187563
Target:  5'- --gGGCgaCGAuGGCCGUcauGCGUGCaGCCCc -3'
miRNA:   3'- uagCCG--GCU-CCGGCA---CGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 23852 0.68 0.160281
Target:  5'- -aCGGCC-AGGCCGUcaccGCgaGCGCgGCCUc -3'
miRNA:   3'- uaGCCGGcUCCGGCA----CG--CGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 23962 0.68 0.164566
Target:  5'- aAUCGGCCGAcGCCGccgGCGcCGCga-CCg -3'
miRNA:   3'- -UAGCCGGCUcCGGCa--CGC-GCGacgGG- -5'
26467 5' -64.6 NC_005357.1 + 24584 0.68 0.164566
Target:  5'- -aCGGUCG-GGCCGUccgGCGUGUccuUGCCg -3'
miRNA:   3'- uaGCCGGCuCCGGCA---CGCGCG---ACGGg -5'
26467 5' -64.6 NC_005357.1 + 24719 0.66 0.218853
Target:  5'- aGUCGGUCG-GGCCGcuuccaccGCGC-CUGCgCg -3'
miRNA:   3'- -UAGCCGGCuCCGGCa-------CGCGcGACGgG- -5'
26467 5' -64.6 NC_005357.1 + 25286 0.69 0.129485
Target:  5'- cGUCGaauGCCuuGAGGUCGUGCG-GCcgGCCCu -3'
miRNA:   3'- -UAGC---CGG--CUCCGGCACGCgCGa-CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.