Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26467 | 5' | -64.6 | NC_005357.1 | + | 4552 | 0.67 | 0.178042 |
Target: 5'- uUgGGCuUGAGGCCGaagucGCcgagGCGCUGCUCg -3' miRNA: 3'- uAgCCG-GCUCCGGCa----CG----CGCGACGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 16164 | 0.67 | 0.19249 |
Target: 5'- -gCGaGCCGAccaGGCCG-GCG-GgUGCCCg -3' miRNA: 3'- uaGC-CGGCU---CCGGCaCGCgCgACGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 17343 | 0.67 | 0.178042 |
Target: 5'- -aCGGCgCcGGGCgCGcUGCGCuggguggcgauGCUGCCCg -3' miRNA: 3'- uaGCCG-GcUCCG-GC-ACGCG-----------CGACGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 14996 | 0.67 | 0.202685 |
Target: 5'- --gGGCCuGcGGCCGccggGCGCGgUGCgCCa -3' miRNA: 3'- uagCCGG-CuCCGGCa---CGCGCgACG-GG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 22211 | 0.67 | 0.173444 |
Target: 5'- --aGGCCaacagccGGCCGcGgGCGCUGCCa -3' miRNA: 3'- uagCCGGcu-----CCGGCaCgCGCGACGGg -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 28628 | 0.67 | 0.182748 |
Target: 5'- -gCGGauGAGGCCGgccaguuccGCGCGCagUGCCa -3' miRNA: 3'- uaGCCggCUCCGGCa--------CGCGCG--ACGGg -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 8573 | 0.67 | 0.19753 |
Target: 5'- cUgGGCguCGuAGGCCGcGCGUGCgGCCUg -3' miRNA: 3'- uAgCCG--GC-UCCGGCaCGCGCGaCGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 428 | 0.67 | 0.178042 |
Target: 5'- cGUCGGCCGuaccuugucguuGGGCUGcUGCGCG--GCCa -3' miRNA: 3'- -UAGCCGGC------------UCCGGC-ACGCGCgaCGGg -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 27797 | 0.67 | 0.179912 |
Target: 5'- -gCGcGCCGcgcaGCCGcagcacguccucgcGCGCGCUGCCCg -3' miRNA: 3'- uaGC-CGGCuc--CGGCa-------------CGCGCGACGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 35857 | 0.67 | 0.179912 |
Target: 5'- -cUGGCCGAGGCgGauggcaagcccuacGCGgGCUGCUa -3' miRNA: 3'- uaGCCGGCUCCGgCa-------------CGCgCGACGGg -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 41618 | 0.67 | 0.19753 |
Target: 5'- uUCGGCaaGGGCUGggcgcgGCGCGUcGCCg -3' miRNA: 3'- uAGCCGgcUCCGGCa-----CGCGCGaCGGg -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 25776 | 0.67 | 0.187563 |
Target: 5'- -gCGGCaaCGAuGGCCGcgaUGCGCGCggcgcGCUCg -3' miRNA: 3'- uaGCCG--GCU-CCGGC---ACGCGCGa----CGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 23590 | 0.67 | 0.187563 |
Target: 5'- --gGGCgaCGAuGGCCGUcauGCGUGCaGCCCc -3' miRNA: 3'- uagCCG--GCU-CCGGCA---CGCGCGaCGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 34802 | 0.67 | 0.187563 |
Target: 5'- --aGGCCaAGGCCacGUGUccgGCGCUGCgCg -3' miRNA: 3'- uagCCGGcUCCGG--CACG---CGCGACGgG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 34563 | 0.68 | 0.160281 |
Target: 5'- cAUCGGCCGAaGCC-UGaacCGCGaaGCCCg -3' miRNA: 3'- -UAGCCGGCUcCGGcAC---GCGCgaCGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 22068 | 0.68 | 0.168953 |
Target: 5'- cUCgGGUCGcGGUCG-GCGCGCgGCUCg -3' miRNA: 3'- uAG-CCGGCuCCGGCaCGCGCGaCGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 23852 | 0.68 | 0.160281 |
Target: 5'- -aCGGCC-AGGCCGUcaccGCgaGCGCgGCCUc -3' miRNA: 3'- uaGCCGGcUCCGGCA----CG--CGCGaCGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 12211 | 0.68 | 0.152013 |
Target: 5'- gAUC-GCCGAGuG-CGUGCGCGUgcucaaGCCCg -3' miRNA: 3'- -UAGcCGGCUC-CgGCACGCGCGa-----CGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 29762 | 0.68 | 0.153635 |
Target: 5'- cUCGGCUGcugccAGGCgCGUGCGCgagauuucggcauacGCUGUCUc -3' miRNA: 3'- uAGCCGGC-----UCCG-GCACGCG---------------CGACGGG- -5' |
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26467 | 5' | -64.6 | NC_005357.1 | + | 19083 | 0.68 | 0.152013 |
Target: 5'- cAUCGGCggCGAGGCCGUcgaauuGCGCgGCUaCCa -3' miRNA: 3'- -UAGCCG--GCUCCGGCA------CGCG-CGAcGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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