miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 5' -64.6 NC_005357.1 + 31730 1.04 0.000216
Target:  5'- aAUCGGCCGAGGCCGUGCGCGCUGCCg -3'
miRNA:   3'- -UAGCCGGCUCCGGCACGCGCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 23962 0.68 0.164566
Target:  5'- aAUCGGCCGAcGCCGccgGCGcCGCga-CCg -3'
miRNA:   3'- -UAGCCGGCUcCGGCa--CGC-GCGacgGG- -5'
26467 5' -64.6 NC_005357.1 + 4552 0.67 0.178042
Target:  5'- uUgGGCuUGAGGCCGaagucGCcgagGCGCUGCUCg -3'
miRNA:   3'- uAgCCG-GCUCCGGCa----CG----CGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 41307 0.66 0.23611
Target:  5'- -aCGGuuacaCCG-GGCCGaUGCGCGacaUGCCg -3'
miRNA:   3'- uaGCC-----GGCuCCGGC-ACGCGCg--ACGGg -5'
26467 5' -64.6 NC_005357.1 + 17689 0.72 0.074902
Target:  5'- cAUgGGUCGAGGCCGcGCagGCGCgguggaagcgGCCCg -3'
miRNA:   3'- -UAgCCGGCUCCGGCaCG--CGCGa---------CGGG- -5'
26467 5' -64.6 NC_005357.1 + 17989 0.71 0.08842
Target:  5'- uGUC-GCCGAGGCC--GCGCGCgGCaCCg -3'
miRNA:   3'- -UAGcCGGCUCCGGcaCGCGCGaCG-GG- -5'
26467 5' -64.6 NC_005357.1 + 14935 0.7 0.118449
Target:  5'- -gCGGCCGAGGCCGccggcauccucgcgUggugcguggcgGCGCGCUGgCa -3'
miRNA:   3'- uaGCCGGCUCCGGC--------------A-----------CGCGCGACgGg -5'
26467 5' -64.6 NC_005357.1 + 14729 0.7 0.119415
Target:  5'- -gCGaGCCGcuGCCG-GCGCGCgGCCUg -3'
miRNA:   3'- uaGC-CGGCucCGGCaCGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 2573 0.69 0.140335
Target:  5'- -aCGGCCca-GCgCGUGCGCGCgcuugccGCCCu -3'
miRNA:   3'- uaGCCGGcucCG-GCACGCGCGa------CGGG- -5'
26467 5' -64.6 NC_005357.1 + 34563 0.68 0.160281
Target:  5'- cAUCGGCCGAaGCC-UGaacCGCGaaGCCCg -3'
miRNA:   3'- -UAGCCGGCUcCGGcAC---GCGCgaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 18672 0.68 0.152013
Target:  5'- cAUCGGCCcgguGGcGCCGgcaugGCGCuGCUGCgCg -3'
miRNA:   3'- -UAGCCGGc---UC-CGGCa----CGCG-CGACGgG- -5'
26467 5' -64.6 NC_005357.1 + 32023 0.69 0.129485
Target:  5'- -gUGG-CGAGGCCaucgGCGCGCUGCa- -3'
miRNA:   3'- uaGCCgGCUCCGGca--CGCGCGACGgg -5'
26467 5' -64.6 NC_005357.1 + 18885 0.78 0.024943
Target:  5'- uGUCGGCCGAGGCCaucgaccgcGUGCGCcGCCUg -3'
miRNA:   3'- -UAGCCGGCUCCGGca-------CGCGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 19083 0.68 0.152013
Target:  5'- cAUCGGCggCGAGGCCGUcgaauuGCGCgGCUaCCa -3'
miRNA:   3'- -UAGCCG--GCUCCGGCA------CGCG-CGAcGGg -5'
26467 5' -64.6 NC_005357.1 + 8294 0.74 0.054486
Target:  5'- -gCuGCCGGGGCagugcagccagcgGUGCGCGCUGCUCg -3'
miRNA:   3'- uaGcCGGCUCCGg------------CACGCGCGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 33578 0.69 0.122688
Target:  5'- -gCGaCCGAGGCCaa-CGCGCUGgCCCg -3'
miRNA:   3'- uaGCcGGCUCCGGcacGCGCGAC-GGG- -5'
26467 5' -64.6 NC_005357.1 + 23852 0.68 0.160281
Target:  5'- -aCGGCC-AGGCCGUcaccGCgaGCGCgGCCUc -3'
miRNA:   3'- uaGCCGGcUCCGGCA----CG--CGCGaCGGG- -5'
26467 5' -64.6 NC_005357.1 + 22211 0.67 0.173444
Target:  5'- --aGGCCaacagccGGCCGcGgGCGCUGCCa -3'
miRNA:   3'- uagCCGGcu-----CCGGCaCgCGCGACGGg -5'
26467 5' -64.6 NC_005357.1 + 33645 0.73 0.070853
Target:  5'- -gCGGCCGAcccaUCGUGCGCcgcguGCUGCCCg -3'
miRNA:   3'- uaGCCGGCUcc--GGCACGCG-----CGACGGG- -5'
26467 5' -64.6 NC_005357.1 + 32420 0.71 0.101427
Target:  5'- --gGGCgGGGGCCGgGCGCGCgGCaCUu -3'
miRNA:   3'- uagCCGgCUCCGGCaCGCGCGaCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.