miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26468 3' -61.9 NC_005357.1 + 13317 0.72 0.117004
Target:  5'- cGCGCgUGACCGGcagcaAGUCcCGCAcGGGCCUg -3'
miRNA:   3'- -CGCG-GCUGGCU-----UCGGuGCGU-CCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 13347 0.68 0.251869
Target:  5'- uCGCCG-CCGAAGUCGCGCAauuGcuucuggaaauaGGCCa -3'
miRNA:   3'- cGCGGCuGGCUUCGGUGCGU---C------------CCGGa -5'
26468 3' -61.9 NC_005357.1 + 13823 0.67 0.290163
Target:  5'- cGCGCCcgguucaaggaacuGACCGAcaCCACGCugccGGuGGCCg -3'
miRNA:   3'- -CGCGG--------------CUGGCUucGGUGCG----UC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 14596 0.68 0.239453
Target:  5'- gGCG-CGGCCGgcGCCAcCGC-GGGCa- -3'
miRNA:   3'- -CGCgGCUGGCuuCGGU-GCGuCCCGga -5'
26468 3' -61.9 NC_005357.1 + 14667 0.66 0.299512
Target:  5'- cGUGuCCGAgCCGGacgagggcagcgAGUUGCGCgAGGGCCUc -3'
miRNA:   3'- -CGC-GGCU-GGCU------------UCGGUGCG-UCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 14725 0.67 0.27148
Target:  5'- gGCGgCGAgCCGcuGCCgGCGCGcGGCCUg -3'
miRNA:   3'- -CGCgGCU-GGCuuCGG-UGCGUcCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 14975 0.66 0.306861
Target:  5'- cGCGCUGGCaua--CCAgCGcCAGGGCCUg -3'
miRNA:   3'- -CGCGGCUGgcuucGGU-GC-GUCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 15459 0.66 0.306861
Target:  5'- cGCGCCcuuGGCCGAAGCUgccguccaguuGCaucgccaccgGCAGGGUUUg -3'
miRNA:   3'- -CGCGG---CUGGCUUCGG-----------UG----------CGUCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 16167 0.7 0.166297
Target:  5'- -aGCCGACC-AGGCCG-GCGGGuGCCc -3'
miRNA:   3'- cgCGGCUGGcUUCGGUgCGUCC-CGGa -5'
26468 3' -61.9 NC_005357.1 + 16584 0.68 0.239453
Target:  5'- cGCGCCGGaCGAGGCCgaccACGCGaugguguuGGcGCCg -3'
miRNA:   3'- -CGCGGCUgGCUUCGG----UGCGU--------CC-CGGa -5'
26468 3' -61.9 NC_005357.1 + 16650 0.66 0.31738
Target:  5'- gGUGCCGGCCGAcgagggagcggacucGGUuuuacccucggCAUcCAGGGCCg -3'
miRNA:   3'- -CGCGGCUGGCU---------------UCG-----------GUGcGUCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 16824 0.73 0.107741
Target:  5'- cGCGCCG-CCGugguuGCCACuGCcuGGGCCg -3'
miRNA:   3'- -CGCGGCuGGCuu---CGGUG-CGu-CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 17074 0.71 0.141571
Target:  5'- cGCGCaCGAaggCGAAGCCgGCGCGguucucggccGGGCCUu -3'
miRNA:   3'- -CGCG-GCUg--GCUUCGG-UGCGU----------CCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 17345 0.67 0.285224
Target:  5'- gGCGCCGGgCGc-GCUGCGCuGGGUg- -3'
miRNA:   3'- -CGCGGCUgGCuuCGGUGCGuCCCGga -5'
26468 3' -61.9 NC_005357.1 + 17448 0.72 0.123586
Target:  5'- cCGCCagcaucgaGGCCaGguGCCACGcCAGGGCCUg -3'
miRNA:   3'- cGCGG--------CUGG-CuuCGGUGC-GUCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 17681 0.67 0.258273
Target:  5'- --uCCGACagcauggguCGAGGCCGCGCAGGcGCg- -3'
miRNA:   3'- cgcGGCUG---------GCUUCGGUGCGUCC-CGga -5'
26468 3' -61.9 NC_005357.1 + 17988 0.75 0.073776
Target:  5'- aUGUCG-CCGAGGCCGCGCGcggcaccgacaaaucGGGCCg -3'
miRNA:   3'- cGCGGCuGGCUUCGGUGCGU---------------CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 18082 0.67 0.258273
Target:  5'- uGgGCCG-CCGAAGCCGgCGCgaaccAGGacGCCUu -3'
miRNA:   3'- -CgCGGCuGGCUUCGGU-GCG-----UCC--CGGA- -5'
26468 3' -61.9 NC_005357.1 + 18263 0.67 0.258273
Target:  5'- aCGCCGAagcgCGcAGCCgucgagGCGCuGGGCCa -3'
miRNA:   3'- cGCGGCUg---GCuUCGG------UGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 18705 0.69 0.205254
Target:  5'- cGCGCC-ACCGAGGCaCugGCccgcgaccuGGGCgCUa -3'
miRNA:   3'- -CGCGGcUGGCUUCG-GugCGu--------CCCG-GA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.