miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26468 3' -61.9 NC_005357.1 + 8557 0.7 0.164974
Target:  5'- cGCGCuCGACCucauccugggcgucGuAGGCCGCGCGuGcGGCCUg -3'
miRNA:   3'- -CGCG-GCUGG--------------C-UUCGGUGCGU-C-CCGGA- -5'
26468 3' -61.9 NC_005357.1 + 8806 0.7 0.170778
Target:  5'- cGCGCCGgucaguACCGAucugcugggucgGGCCAgcCGCAacgcGGGCCa -3'
miRNA:   3'- -CGCGGC------UGGCU------------UCGGU--GCGU----CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 8937 0.67 0.278285
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 8984 0.67 0.278285
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 9032 0.67 0.2923
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 9080 0.67 0.2923
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 9128 0.67 0.2923
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 9176 0.67 0.2923
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 9224 0.67 0.2923
Target:  5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 9578 0.73 0.099169
Target:  5'- gGCGCCGACCGucugcGGCCAgGCGaaGCCg -3'
miRNA:   3'- -CGCGGCUGGCu----UCGGUgCGUccCGGa -5'
26468 3' -61.9 NC_005357.1 + 10464 0.7 0.16063
Target:  5'- gGCGUCGcCCugGAAGUCGCGCAgcaccggcccgaacGGGCCg -3'
miRNA:   3'- -CGCGGCuGG--CUUCGGUGCGU--------------CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 10521 0.67 0.2923
Target:  5'- cUGCUGACCGccGGCCACGCuuuccGCCg -3'
miRNA:   3'- cGCGGCUGGCu-UCGGUGCGucc--CGGa -5'
26468 3' -61.9 NC_005357.1 + 10760 0.69 0.189793
Target:  5'- cGCGCuCGACUucGGCC-CGCAGuucuucGGCCUg -3'
miRNA:   3'- -CGCG-GCUGGcuUCGGuGCGUC------CCGGA- -5'
26468 3' -61.9 NC_005357.1 + 10891 0.66 0.327389
Target:  5'- cGCGCgGcguauuccuccACCGGAauggcgaccugcccGCCGguuUGCAGGGCCUc -3'
miRNA:   3'- -CGCGgC-----------UGGCUU--------------CGGU---GCGUCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 11520 0.67 0.27148
Target:  5'- uGCGCUGGCgUGAGGCCcUGCGagcGGGCa- -3'
miRNA:   3'- -CGCGGCUG-GCUUCGGuGCGU---CCCGga -5'
26468 3' -61.9 NC_005357.1 + 11565 0.77 0.049088
Target:  5'- cCGCCGGucaUCGAAGCCAUGCcgcccAGGGCCg -3'
miRNA:   3'- cGCGGCU---GGCUUCGGUGCG-----UCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 12995 0.68 0.227553
Target:  5'- cCGCCcGCCGuucucguacAGGCCGCGCAGcgcaguggcgacGGCCUc -3'
miRNA:   3'- cGCGGcUGGC---------UUCGGUGCGUC------------CCGGA- -5'
26468 3' -61.9 NC_005357.1 + 13052 0.67 0.27148
Target:  5'- cGCGCCGAguCCGAGGgCugGggCAaGGCCa -3'
miRNA:   3'- -CGCGGCU--GGCUUCgGugC--GUcCCGGa -5'
26468 3' -61.9 NC_005357.1 + 13164 0.68 0.239453
Target:  5'- aUGUCGGCCaGugucGGCCGCGCuGGGCg- -3'
miRNA:   3'- cGCGGCUGG-Cu---UCGGUGCGuCCCGga -5'
26468 3' -61.9 NC_005357.1 + 13290 0.75 0.070928
Target:  5'- aGCGCCGAUUGcAGCgCGC-CGGGGCCg -3'
miRNA:   3'- -CGCGGCUGGCuUCG-GUGcGUCCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.