miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26468 3' -61.9 NC_005357.1 + 17448 0.72 0.123586
Target:  5'- cCGCCagcaucgaGGCCaGguGCCACGcCAGGGCCUg -3'
miRNA:   3'- cGCGG--------CUGG-CuuCGGUGC-GUCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 20125 0.72 0.127005
Target:  5'- cCGUCG-UCGAAuGCCACGCcuucgGGGGCCUg -3'
miRNA:   3'- cGCGGCuGGCUU-CGGUGCG-----UCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 41744 0.72 0.127005
Target:  5'- gGCGgcCCGGCCGgcGCCGcCGUAGgcGGCCUg -3'
miRNA:   3'- -CGC--GGCUGGCuuCGGU-GCGUC--CCGGA- -5'
26468 3' -61.9 NC_005357.1 + 19642 0.71 0.134106
Target:  5'- aUGCUGACCG--GCC-CGCAGGGCg- -3'
miRNA:   3'- cGCGGCUGGCuuCGGuGCGUCCCGga -5'
26468 3' -61.9 NC_005357.1 + 24419 0.71 0.137792
Target:  5'- cGCaGCCGGcCCGAuuugucgguGCCGCGCGcGGCCUc -3'
miRNA:   3'- -CG-CGGCU-GGCUu--------CGGUGCGUcCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 7144 0.71 0.141571
Target:  5'- uCGUCGGCUGcGGCCugGaugacCAGGGCCg -3'
miRNA:   3'- cGCGGCUGGCuUCGGugC-----GUCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 36727 0.71 0.141571
Target:  5'- gGUGCCGACCGAcaaGGCCAagGaCAaGGCCg -3'
miRNA:   3'- -CGCGGCUGGCU---UCGGUg-C-GUcCCGGa -5'
26468 3' -61.9 NC_005357.1 + 17074 0.71 0.141571
Target:  5'- cGCGCaCGAaggCGAAGCCgGCGCGguucucggccGGGCCUu -3'
miRNA:   3'- -CGCG-GCUg--GCUUCGG-UGCGU----------CCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 23379 0.71 0.145444
Target:  5'- aCGCUGAUCGAcGCCGC-CGGcGGCCg -3'
miRNA:   3'- cGCGGCUGGCUuCGGUGcGUC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 26139 0.71 0.148213
Target:  5'- cGCGacgaCGACCGGguagccuuccggguGGCCGCGCGcGaGGCCa -3'
miRNA:   3'- -CGCg---GCUGGCU--------------UCGGUGCGU-C-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 32551 0.71 0.153483
Target:  5'- cGCGCCuGGCCGAgaAGCagCGCGCcGGuGCCa -3'
miRNA:   3'- -CGCGG-CUGGCU--UCG--GUGCGuCC-CGGa -5'
26468 3' -61.9 NC_005357.1 + 33777 0.7 0.15723
Target:  5'- aUGCCGACCGcgcgaugaAGGCCGgcgaccucgccacCGCAGcGGCCg -3'
miRNA:   3'- cGCGGCUGGC--------UUCGGU-------------GCGUC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 5126 0.7 0.157652
Target:  5'- gGCGCCGuugaACUGcaacguGCCGCGCAGGcgGCCg -3'
miRNA:   3'- -CGCGGC----UGGCuu----CGGUGCGUCC--CGGa -5'
26468 3' -61.9 NC_005357.1 + 10464 0.7 0.16063
Target:  5'- gGCGUCGcCCugGAAGUCGCGCAgcaccggcccgaacGGGCCg -3'
miRNA:   3'- -CGCGGCuGG--CUUCGGUGCGU--------------CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 8557 0.7 0.164974
Target:  5'- cGCGCuCGACCucauccugggcgucGuAGGCCGCGCGuGcGGCCUg -3'
miRNA:   3'- -CGCG-GCUGG--------------C-UUCGGUGCGU-C-CCGGA- -5'
26468 3' -61.9 NC_005357.1 + 34029 0.7 0.166297
Target:  5'- gGCcCUGGCCGAcuGGCUACGCAGccagcgcgaGGCCg -3'
miRNA:   3'- -CGcGGCUGGCU--UCGGUGCGUC---------CCGGa -5'
26468 3' -61.9 NC_005357.1 + 16167 0.7 0.166297
Target:  5'- -aGCCGACC-AGGCCG-GCGGGuGCCc -3'
miRNA:   3'- cgCGGCUGGcUUCGGUgCGUCC-CGGa -5'
26468 3' -61.9 NC_005357.1 + 1763 0.7 0.170778
Target:  5'- -gGCCGGCCugcGCCugGCGcgucGGGCCg -3'
miRNA:   3'- cgCGGCUGGcuuCGGugCGU----CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 8806 0.7 0.170778
Target:  5'- cGCGCCGgucaguACCGAucugcugggucgGGCCAgcCGCAacgcGGGCCa -3'
miRNA:   3'- -CGCGGC------UGGCU------------UCGGU--GCGU----CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 35376 0.7 0.175366
Target:  5'- cGCuGCCGcCCGAGGCCAUGC---GCCUg -3'
miRNA:   3'- -CG-CGGCuGGCUUCGGUGCGuccCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.