Results 21 - 40 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26468 | 3' | -61.9 | NC_005357.1 | + | 33123 | 0.66 | 0.30612 |
Target: 5'- uGCGCCGccaggucGCCGAGGaagucaaUGCGCAgccgguguaccGGGCCg -3' miRNA: 3'- -CGCGGC-------UGGCUUCg------GUGCGU-----------CCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 30094 | 0.66 | 0.302435 |
Target: 5'- gGCGCCacGGCCcuugucccaggcgauGAGGCCGCGcCAGaacacgccgccGGCCUg -3' miRNA: 3'- -CGCGG--CUGG---------------CUUCGGUGC-GUC-----------CCGGA- -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 1963 | 0.66 | 0.299512 |
Target: 5'- aGCGCgCGGCCcuggggGAAGgCACGCuguaGGCCg -3' miRNA: 3'- -CGCG-GCUGG------CUUCgGUGCGuc--CCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 8206 | 0.66 | 0.299512 |
Target: 5'- cGCGCaCGGCCucguAGUCGCGCuggucGGcGGCCg -3' miRNA: 3'- -CGCG-GCUGGcu--UCGGUGCG-----UC-CCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 5753 | 0.66 | 0.299512 |
Target: 5'- cGCGCCGGgCagcGAGUgCGC-CAGGGCCUu -3' miRNA: 3'- -CGCGGCUgGc--UUCG-GUGcGUCCCGGA- -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 14667 | 0.66 | 0.299512 |
Target: 5'- cGUGuCCGAgCCGGacgagggcagcgAGUUGCGCgAGGGCCUc -3' miRNA: 3'- -CGC-GGCU-GGCU------------UCGGUGCG-UCCCGGA- -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 6351 | 0.67 | 0.2923 |
Target: 5'- aGCGcCCGGcCCGAAgGCCgggGCGCuGGGUUa -3' miRNA: 3'- -CGC-GGCU-GGCUU-CGG---UGCGuCCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 32366 | 0.67 | 0.2923 |
Target: 5'- uCGCCG-CCGAggccccGGCCGCccaGCAGGaaGCCa -3' miRNA: 3'- cGCGGCuGGCU------UCGGUG---CGUCC--CGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 35652 | 0.67 | 0.2923 |
Target: 5'- gGCGCUGaACC-AGGCCAUcgaGCAGGucGCCa -3' miRNA: 3'- -CGCGGC-UGGcUUCGGUG---CGUCC--CGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 37321 | 0.67 | 0.2923 |
Target: 5'- gGCGCCaGCCGca-CCggACGCuGGGCCg -3' miRNA: 3'- -CGCGGcUGGCuucGG--UGCGuCCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 9032 | 0.67 | 0.2923 |
Target: 5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3' miRNA: 3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 10521 | 0.67 | 0.2923 |
Target: 5'- cUGCUGACCGccGGCCACGCuuuccGCCg -3' miRNA: 3'- cGCGGCUGGCu-UCGGUGCGucc--CGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 9176 | 0.67 | 0.2923 |
Target: 5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3' miRNA: 3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 9128 | 0.67 | 0.2923 |
Target: 5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3' miRNA: 3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 9080 | 0.67 | 0.2923 |
Target: 5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3' miRNA: 3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 9224 | 0.67 | 0.2923 |
Target: 5'- -gGCCGuGCCGcgauAGCCA-GCGGuGGCCg -3' miRNA: 3'- cgCGGC-UGGCu---UCGGUgCGUC-CCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 13823 | 0.67 | 0.290163 |
Target: 5'- cGCGCCcgguucaaggaacuGACCGAcaCCACGCugccGGuGGCCg -3' miRNA: 3'- -CGCGG--------------CUGGCUucGGUGCG----UC-CCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 17345 | 0.67 | 0.285224 |
Target: 5'- gGCGCCGGgCGc-GCUGCGCuGGGUg- -3' miRNA: 3'- -CGCGGCUgGCuuCGGUGCGuCCCGga -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 21937 | 0.67 | 0.285224 |
Target: 5'- cCGCCGACCaAGGCCcaaCGGGGCa- -3' miRNA: 3'- cGCGGCUGGcUUCGGugcGUCCCGga -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 8984 | 0.67 | 0.278285 |
Target: 5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3' miRNA: 3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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