miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26468 3' -61.9 NC_005357.1 + 811 0.67 0.278285
Target:  5'- cGCGCCGcgcccagcccuuGCCGAacgucGGCCA-GguGGGCa- -3'
miRNA:   3'- -CGCGGC------------UGGCU-----UCGGUgCguCCCGga -5'
26468 3' -61.9 NC_005357.1 + 8937 0.67 0.278285
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 850 0.67 0.277598
Target:  5'- -aGCCGACCGuGGCCuguauggcuuuCGUuucccuaucgacgAGGGCCg -3'
miRNA:   3'- cgCGGCUGGCuUCGGu----------GCG-------------UCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 2762 0.67 0.276229
Target:  5'- cGUGCCGACCacuGCCgacaccucgacguuGCGCAGGuGCg- -3'
miRNA:   3'- -CGCGGCUGGcuuCGG--------------UGCGUCC-CGga -5'
26468 3' -61.9 NC_005357.1 + 36043 0.67 0.275547
Target:  5'- cGgGCCGGCCGGccugcgccugauuGCCgACGU-GGGCCg -3'
miRNA:   3'- -CgCGGCUGGCUu------------CGG-UGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 14725 0.67 0.27148
Target:  5'- gGCGgCGAgCCGcuGCCgGCGCGcGGCCUg -3'
miRNA:   3'- -CGCgGCU-GGCuuCGG-UGCGUcCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 11520 0.67 0.27148
Target:  5'- uGCGCUGGCgUGAGGCCcUGCGagcGGGCa- -3'
miRNA:   3'- -CGCGGCUG-GCUUCGGuGCGU---CCCGga -5'
26468 3' -61.9 NC_005357.1 + 13052 0.67 0.27148
Target:  5'- cGCGCCGAguCCGAGGgCugGggCAaGGCCa -3'
miRNA:   3'- -CGCGGCU--GGCUUCgGugC--GUcCCGGa -5'
26468 3' -61.9 NC_005357.1 + 28211 0.67 0.27148
Target:  5'- cGCGCC-AagGAAGCCGCGCuGcGCCUg -3'
miRNA:   3'- -CGCGGcUggCUUCGGUGCGuCcCGGA- -5'
26468 3' -61.9 NC_005357.1 + 34199 0.67 0.27148
Target:  5'- uCGCCGACgaGGgcacGGCCGCGCAcgaacuGGCCg -3'
miRNA:   3'- cGCGGCUGg-CU----UCGGUGCGUc-----CCGGa -5'
26468 3' -61.9 NC_005357.1 + 6642 0.67 0.27148
Target:  5'- cGCGCuUGGCCGGAGuguCCGCGCucauGGUCUg -3'
miRNA:   3'- -CGCG-GCUGGCUUC---GGUGCGuc--CCGGA- -5'
26468 3' -61.9 NC_005357.1 + 33233 0.67 0.26481
Target:  5'- cGCGCCG-CCGAgcaGGCCaACGUcgacGGcGCCa -3'
miRNA:   3'- -CGCGGCuGGCU---UCGG-UGCGu---CC-CGGa -5'
26468 3' -61.9 NC_005357.1 + 18263 0.67 0.258273
Target:  5'- aCGCCGAagcgCGcAGCCgucgagGCGCuGGGCCa -3'
miRNA:   3'- cGCGGCUg---GCuUCGG------UGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 28970 0.67 0.258273
Target:  5'- uGC-CCGAcaccgcgcCCGAGGCCGCcaaGCuggcGGGCCUg -3'
miRNA:   3'- -CGcGGCU--------GGCUUCGGUG---CGu---CCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 402 0.67 0.258273
Target:  5'- aGCGCgCGACUGuuGAGCagCACGUcgcGGGCCa -3'
miRNA:   3'- -CGCG-GCUGGC--UUCG--GUGCGu--CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 28109 0.67 0.258273
Target:  5'- cGCGgUGAUCGuGGUCACGCGGuacGCCUg -3'
miRNA:   3'- -CGCgGCUGGCuUCGGUGCGUCc--CGGA- -5'
26468 3' -61.9 NC_005357.1 + 18082 0.67 0.258273
Target:  5'- uGgGCCG-CCGAAGCCGgCGCgaaccAGGacGCCUu -3'
miRNA:   3'- -CgCGGCuGGCUUCGGU-GCG-----UCC--CGGA- -5'
26468 3' -61.9 NC_005357.1 + 17681 0.67 0.258273
Target:  5'- --uCCGACagcauggguCGAGGCCGCGCAGGcGCg- -3'
miRNA:   3'- cgcGGCUG---------GCUUCGGUGCGUCC-CGga -5'
26468 3' -61.9 NC_005357.1 + 21145 0.68 0.254415
Target:  5'- aCGCCGACCGcuGGGCCGacacuuacgccgacaUGCuGGGCa- -3'
miRNA:   3'- cGCGGCUGGC--UUCGGU---------------GCGuCCCGga -5'
26468 3' -61.9 NC_005357.1 + 13347 0.68 0.251869
Target:  5'- uCGCCG-CCGAAGUCGCGCAauuGcuucuggaaauaGGCCa -3'
miRNA:   3'- cGCGGCuGGCUUCGGUGCGU---C------------CCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.