miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26468 3' -61.9 NC_005357.1 + 37820 0.66 0.314348
Target:  5'- cCGCCGacaucaucGCCGAGGCCGaGCAGuuccucGCCUg -3'
miRNA:   3'- cGCGGC--------UGGCUUCGGUgCGUCc-----CGGA- -5'
26468 3' -61.9 NC_005357.1 + 15459 0.66 0.306861
Target:  5'- cGCGCCcuuGGCCGAAGCUgccguccaguuGCaucgccaccgGCAGGGUUUg -3'
miRNA:   3'- -CGCGG---CUGGCUUCGG-----------UG----------CGUCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 7557 0.66 0.329732
Target:  5'- cGCgGCCGGgucguacuuaaUCGGAuaguagccGCCGCGUAGGGUCa -3'
miRNA:   3'- -CG-CGGCU-----------GGCUU--------CGGUGCGUCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 25349 0.66 0.33763
Target:  5'- -gGCCGGCCaGuucgcauagccGGCCACcggGCAGGcGCCa -3'
miRNA:   3'- cgCGGCUGGcU-----------UCGGUG---CGUCC-CGGa -5'
26468 3' -61.9 NC_005357.1 + 26982 0.66 0.33763
Target:  5'- -aGCCGACCGAcGCUGCaagaacuGGGGCUa -3'
miRNA:   3'- cgCGGCUGGCUuCGGUGcg-----UCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 22836 0.66 0.329732
Target:  5'- cGCGCUGccgacaGCCGAcAGCgCGCGCugcgaauuGGGCUg -3'
miRNA:   3'- -CGCGGC------UGGCU-UCG-GUGCGu-------CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 2762 0.67 0.276229
Target:  5'- cGUGCCGACCacuGCCgacaccucgacguuGCGCAGGuGCg- -3'
miRNA:   3'- -CGCGGCUGGcuuCGG--------------UGCGUCC-CGga -5'
26468 3' -61.9 NC_005357.1 + 17681 0.67 0.258273
Target:  5'- --uCCGACagcauggguCGAGGCCGCGCAGGcGCg- -3'
miRNA:   3'- cgcGGCUG---------GCUUCGGUGCGUCC-CGga -5'
26468 3' -61.9 NC_005357.1 + 33233 0.67 0.26481
Target:  5'- cGCGCCG-CCGAgcaGGCCaACGUcgacGGcGCCa -3'
miRNA:   3'- -CGCGGCuGGCU---UCGG-UGCGu---CC-CGGa -5'
26468 3' -61.9 NC_005357.1 + 36043 0.67 0.275547
Target:  5'- cGgGCCGGCCGGccugcgccugauuGCCgACGU-GGGCCg -3'
miRNA:   3'- -CgCGGCUGGCUu------------CGG-UGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 37321 0.67 0.2923
Target:  5'- gGCGCCaGCCGca-CCggACGCuGGGCCg -3'
miRNA:   3'- -CGCGGcUGGCuucGG--UGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 18263 0.67 0.258273
Target:  5'- aCGCCGAagcgCGcAGCCgucgagGCGCuGGGCCa -3'
miRNA:   3'- cGCGGCUg---GCuUCGG------UGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 14725 0.67 0.27148
Target:  5'- gGCGgCGAgCCGcuGCCgGCGCGcGGCCUg -3'
miRNA:   3'- -CGCgGCU-GGCuuCGG-UGCGUcCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 13052 0.67 0.27148
Target:  5'- cGCGCCGAguCCGAGGgCugGggCAaGGCCa -3'
miRNA:   3'- -CGCGGCU--GGCUUCgGugC--GUcCCGGa -5'
26468 3' -61.9 NC_005357.1 + 402 0.67 0.258273
Target:  5'- aGCGCgCGACUGuuGAGCagCACGUcgcGGGCCa -3'
miRNA:   3'- -CGCG-GCUGGC--UUCG--GUGCGu--CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 28109 0.67 0.258273
Target:  5'- cGCGgUGAUCGuGGUCACGCGGuacGCCUg -3'
miRNA:   3'- -CGCgGCUGGCuUCGGUGCGUCc--CGGA- -5'
26468 3' -61.9 NC_005357.1 + 18082 0.67 0.258273
Target:  5'- uGgGCCG-CCGAAGCCGgCGCgaaccAGGacGCCUu -3'
miRNA:   3'- -CgCGGCuGGCUUCGGU-GCG-----UCC--CGGA- -5'
26468 3' -61.9 NC_005357.1 + 8984 0.67 0.278285
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 8937 0.67 0.278285
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 850 0.67 0.277598
Target:  5'- -aGCCGACCGuGGCCuguauggcuuuCGUuucccuaucgacgAGGGCCg -3'
miRNA:   3'- cgCGGCUGGCuUCGGu----------GCG-------------UCCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.