miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26468 3' -61.9 NC_005357.1 + 402 0.67 0.258273
Target:  5'- aGCGCgCGACUGuuGAGCagCACGUcgcGGGCCa -3'
miRNA:   3'- -CGCG-GCUGGC--UUCG--GUGCGu--CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 497 0.68 0.245596
Target:  5'- cGCGCUGAac-AAGuCCACGUuGGGCCa -3'
miRNA:   3'- -CGCGGCUggcUUC-GGUGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 692 0.68 0.221793
Target:  5'- gGCGCCGGCCG-GGCCGCccaagauaccGCccaggauaGGGGCg- -3'
miRNA:   3'- -CGCGGCUGGCuUCGGUG----------CG--------UCCCGga -5'
26468 3' -61.9 NC_005357.1 + 811 0.67 0.278285
Target:  5'- cGCGCCGcgcccagcccuuGCCGAacgucGGCCA-GguGGGCa- -3'
miRNA:   3'- -CGCGGC------------UGGCU-----UCGGUgCguCCCGga -5'
26468 3' -61.9 NC_005357.1 + 850 0.67 0.277598
Target:  5'- -aGCCGACCGuGGCCuguauggcuuuCGUuucccuaucgacgAGGGCCg -3'
miRNA:   3'- cgCGGCUGGCuUCGGu----------GCG-------------UCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 1763 0.7 0.170778
Target:  5'- -gGCCGGCCugcGCCugGCGcgucGGGCCg -3'
miRNA:   3'- cgCGGCUGGcuuCGGugCGU----CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 1963 0.66 0.299512
Target:  5'- aGCGCgCGGCCcuggggGAAGgCACGCuguaGGCCg -3'
miRNA:   3'- -CGCG-GCUGG------CUUCgGUGCGuc--CCGGa -5'
26468 3' -61.9 NC_005357.1 + 2762 0.67 0.276229
Target:  5'- cGUGCCGACCacuGCCgacaccucgacguuGCGCAGGuGCg- -3'
miRNA:   3'- -CGCGGCUGGcuuCGG--------------UGCGUCC-CGga -5'
26468 3' -61.9 NC_005357.1 + 3549 0.66 0.329732
Target:  5'- gGCGCCG-CCGAauAGCgCA-GCAgcGGGCUg -3'
miRNA:   3'- -CGCGGCuGGCU--UCG-GUgCGU--CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 3870 0.69 0.210645
Target:  5'- gGCGCCGucGCUGuAGGCCGCGCu--GCCg -3'
miRNA:   3'- -CGCGGC--UGGC-UUCGGUGCGuccCGGa -5'
26468 3' -61.9 NC_005357.1 + 4016 0.73 0.103657
Target:  5'- cGCGCCGGCCaccagcgucauGCCGCGC-GGGUCg -3'
miRNA:   3'- -CGCGGCUGGcuu--------CGGUGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 5126 0.7 0.157652
Target:  5'- gGCGCCGuugaACUGcaacguGCCGCGCAGGcgGCCg -3'
miRNA:   3'- -CGCGGC----UGGCuu----CGGUGCGUCC--CGGa -5'
26468 3' -61.9 NC_005357.1 + 5753 0.66 0.299512
Target:  5'- cGCGCCGGgCagcGAGUgCGC-CAGGGCCUu -3'
miRNA:   3'- -CGCGGCUgGc--UUCG-GUGcGUCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 6351 0.67 0.2923
Target:  5'- aGCGcCCGGcCCGAAgGCCgggGCGCuGGGUUa -3'
miRNA:   3'- -CGC-GGCU-GGCUU-CGG---UGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 6549 0.69 0.205254
Target:  5'- gGCGuuGACguaGcAGcCCGCGUAGGGCUUg -3'
miRNA:   3'- -CGCggCUGg--CuUC-GGUGCGUCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 6642 0.67 0.27148
Target:  5'- cGCGCuUGGCCGGAGuguCCGCGCucauGGUCUg -3'
miRNA:   3'- -CGCG-GCUGGCUUC---GGUGCGuc--CCGGA- -5'
26468 3' -61.9 NC_005357.1 + 7144 0.71 0.141571
Target:  5'- uCGUCGGCUGcGGCCugGaugacCAGGGCCg -3'
miRNA:   3'- cGCGGCUGGCuUCGGugC-----GUCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 7557 0.66 0.329732
Target:  5'- cGCgGCCGGgucguacuuaaUCGGAuaguagccGCCGCGUAGGGUCa -3'
miRNA:   3'- -CG-CGGCU-----------GGCUU--------CGGUGCGUCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 8206 0.66 0.299512
Target:  5'- cGCGCaCGGCCucguAGUCGCGCuggucGGcGGCCg -3'
miRNA:   3'- -CGCG-GCUGGcu--UCGGUGCG-----UC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 8392 0.73 0.107741
Target:  5'- cGCGCUGGCUGcguAGCCAguCGgcCAGGGCCg -3'
miRNA:   3'- -CGCGGCUGGCu--UCGGU--GC--GUCCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.