miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26468 3' -61.9 NC_005357.1 + 41744 0.72 0.127005
Target:  5'- gGCGgcCCGGCCGgcGCCGcCGUAGgcGGCCUg -3'
miRNA:   3'- -CGC--GGCUGGCuuCGGU-GCGUC--CCGGA- -5'
26468 3' -61.9 NC_005357.1 + 41317 0.66 0.33763
Target:  5'- cGgGCCGAUgcgCGAcauGCCGCGCGacacGGCCa -3'
miRNA:   3'- -CgCGGCUG---GCUu--CGGUGCGUc---CCGGa -5'
26468 3' -61.9 NC_005357.1 + 38662 0.69 0.189793
Target:  5'- -gGCaCGACCGAGGCUACGUccAGcGGCg- -3'
miRNA:   3'- cgCG-GCUGGCUUCGGUGCG--UC-CCGga -5'
26468 3' -61.9 NC_005357.1 + 37820 0.66 0.314348
Target:  5'- cCGCCGacaucaucGCCGAGGCCGaGCAGuuccucGCCUg -3'
miRNA:   3'- cGCGGC--------UGGCUUCGGUgCGUCc-----CGGA- -5'
26468 3' -61.9 NC_005357.1 + 37797 0.68 0.239453
Target:  5'- uUGCCGACCcugcGGCaGCGC-GGGCCa -3'
miRNA:   3'- cGCGGCUGGcu--UCGgUGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 37552 0.73 0.110749
Target:  5'- -gGCCG-CCGucGCCGCGCuGGGCa- -3'
miRNA:   3'- cgCGGCuGGCuuCGGUGCGuCCCGga -5'
26468 3' -61.9 NC_005357.1 + 37321 0.67 0.2923
Target:  5'- gGCGCCaGCCGca-CCggACGCuGGGCCg -3'
miRNA:   3'- -CGCGGcUGGCuucGG--UGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 36727 0.71 0.141571
Target:  5'- gGUGCCGACCGAcaaGGCCAagGaCAaGGCCg -3'
miRNA:   3'- -CGCGGCUGGCU---UCGGUg-C-GUcCCGGa -5'
26468 3' -61.9 NC_005357.1 + 36043 0.67 0.275547
Target:  5'- cGgGCCGGCCGGccugcgccugauuGCCgACGU-GGGCCg -3'
miRNA:   3'- -CgCGGCUGGCUu------------CGG-UGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 35652 0.67 0.2923
Target:  5'- gGCGCUGaACC-AGGCCAUcgaGCAGGucGCCa -3'
miRNA:   3'- -CGCGGC-UGGcUUCGGUG---CGUCC--CGGa -5'
26468 3' -61.9 NC_005357.1 + 35376 0.7 0.175366
Target:  5'- cGCuGCCGcCCGAGGCCAUGC---GCCUg -3'
miRNA:   3'- -CG-CGGCuGGCUUCGGUGCGuccCGGA- -5'
26468 3' -61.9 NC_005357.1 + 35240 0.66 0.306861
Target:  5'- cGCGCUGuCCc-GGCUGCGuCAGGGCg- -3'
miRNA:   3'- -CGCGGCuGGcuUCGGUGC-GUCCCGga -5'
26468 3' -61.9 NC_005357.1 + 35197 0.74 0.083923
Target:  5'- cGCGCCaguGGCCGAAGU--UGCAGGGCUUc -3'
miRNA:   3'- -CGCGG---CUGGCUUCGguGCGUCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 35080 0.76 0.059879
Target:  5'- aCGCCGAggUCGAGGCCGCGCucaaGGCCa -3'
miRNA:   3'- cGCGGCU--GGCUUCGGUGCGuc--CCGGa -5'
26468 3' -61.9 NC_005357.1 + 34986 0.69 0.184872
Target:  5'- cGCGCgaaGGCCGAAGCCGaacUGCu-GGCCg -3'
miRNA:   3'- -CGCGg--CUGGCUUCGGU---GCGucCCGGa -5'
26468 3' -61.9 NC_005357.1 + 34316 0.76 0.058207
Target:  5'- aCGCCGGCCGc-GCgGUGCAGGGCCUc -3'
miRNA:   3'- cGCGGCUGGCuuCGgUGCGUCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 34199 0.67 0.27148
Target:  5'- uCGCCGACgaGGgcacGGCCGCGCAcgaacuGGCCg -3'
miRNA:   3'- cGCGGCUGg-CU----UCGGUGCGUc-----CCGGa -5'
26468 3' -61.9 NC_005357.1 + 34029 0.7 0.166297
Target:  5'- gGCcCUGGCCGAcuGGCUACGCAGccagcgcgaGGCCg -3'
miRNA:   3'- -CGcGGCUGGCU--UCGGUGCGUC---------CCGGa -5'
26468 3' -61.9 NC_005357.1 + 33777 0.7 0.15723
Target:  5'- aUGCCGACCGcgcgaugaAGGCCGgcgaccucgccacCGCAGcGGCCg -3'
miRNA:   3'- cGCGGCUGGC--------UUCGGU-------------GCGUC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 33574 0.74 0.079357
Target:  5'- cGUGgCGACCGAGGCCaACGCGcuGGCCc -3'
miRNA:   3'- -CGCgGCUGGCUUCGG-UGCGUc-CCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.