Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26468 | 3' | -61.9 | NC_005357.1 | + | 10760 | 0.69 | 0.189793 |
Target: 5'- cGCGCuCGACUucGGCC-CGCAGuucuucGGCCUg -3' miRNA: 3'- -CGCG-GCUGGcuUCGGuGCGUC------CCGGA- -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 36727 | 0.71 | 0.141571 |
Target: 5'- gGUGCCGACCGAcaaGGCCAagGaCAaGGCCg -3' miRNA: 3'- -CGCGGCUGGCU---UCGGUg-C-GUcCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 10464 | 0.7 | 0.16063 |
Target: 5'- gGCGUCGcCCugGAAGUCGCGCAgcaccggcccgaacGGGCCg -3' miRNA: 3'- -CGCGGCuGG--CUUCGGUGCGU--------------CCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 8557 | 0.7 | 0.164974 |
Target: 5'- cGCGCuCGACCucauccugggcgucGuAGGCCGCGCGuGcGGCCUg -3' miRNA: 3'- -CGCG-GCUGG--------------C-UUCGGUGCGU-C-CCGGA- -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 8806 | 0.7 | 0.170778 |
Target: 5'- cGCGCCGgucaguACCGAucugcugggucgGGCCAgcCGCAacgcGGGCCa -3' miRNA: 3'- -CGCGGC------UGGCU------------UCGGU--GCGU----CCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 35376 | 0.7 | 0.175366 |
Target: 5'- cGCuGCCGcCCGAGGCCAUGC---GCCUg -3' miRNA: 3'- -CG-CGGCuGGCUUCGGUGCGuccCGGA- -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 23753 | 0.7 | 0.180063 |
Target: 5'- aGCGCCauGCCGgcGCCAC-C-GGGCCg -3' miRNA: 3'- -CGCGGc-UGGCuuCGGUGcGuCCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 34986 | 0.69 | 0.184872 |
Target: 5'- cGCGCgaaGGCCGAAGCCGaacUGCu-GGCCg -3' miRNA: 3'- -CGCGg--CUGGCUUCGGU---GCGucCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 19059 | 0.69 | 0.188305 |
Target: 5'- gGCGUCGaucagcguguccucGCCGAGGUCACGCGauugcaGGCCg -3' miRNA: 3'- -CGCGGC--------------UGGCUUCGGUGCGUc-----CCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 17074 | 0.71 | 0.141571 |
Target: 5'- cGCGCaCGAaggCGAAGCCgGCGCGguucucggccGGGCCUu -3' miRNA: 3'- -CGCG-GCUg--GCUUCGG-UGCGU----------CCCGGA- -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 24419 | 0.71 | 0.137792 |
Target: 5'- cGCaGCCGGcCCGAuuugucgguGCCGCGCGcGGCCUc -3' miRNA: 3'- -CG-CGGCU-GGCUu--------CGGUGCGUcCCGGA- -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 20125 | 0.72 | 0.127005 |
Target: 5'- cCGUCG-UCGAAuGCCACGCcuucgGGGGCCUg -3' miRNA: 3'- cGCGGCuGGCUU-CGGUGCG-----UCCCGGA- -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 11565 | 0.77 | 0.049088 |
Target: 5'- cCGCCGGucaUCGAAGCCAUGCcgcccAGGGCCg -3' miRNA: 3'- cGCGGCU---GGCUUCGGUGCG-----UCCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 19615 | 0.77 | 0.053459 |
Target: 5'- uUGCCGuCCGggGUCAUGC-GGGCCg -3' miRNA: 3'- cGCGGCuGGCuuCGGUGCGuCCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 35080 | 0.76 | 0.059879 |
Target: 5'- aCGCCGAggUCGAGGCCGCGCucaaGGCCa -3' miRNA: 3'- cGCGGCU--GGCUUCGGUGCGuc--CCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 13290 | 0.75 | 0.070928 |
Target: 5'- aGCGCCGAUUGcAGCgCGC-CGGGGCCg -3' miRNA: 3'- -CGCGGCUGGCuUCG-GUGcGUCCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 35197 | 0.74 | 0.083923 |
Target: 5'- cGCGCCaguGGCCGAAGU--UGCAGGGCUUc -3' miRNA: 3'- -CGCGG---CUGGCUUCGguGCGUCCCGGA- -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 4016 | 0.73 | 0.103657 |
Target: 5'- cGCGCCGGCCaccagcgucauGCCGCGC-GGGUCg -3' miRNA: 3'- -CGCGGCUGGcuu--------CGGUGCGuCCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 8392 | 0.73 | 0.107741 |
Target: 5'- cGCGCUGGCUGcguAGCCAguCGgcCAGGGCCg -3' miRNA: 3'- -CGCGGCUGGCu--UCGGU--GC--GUCCCGGa -5' |
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26468 | 3' | -61.9 | NC_005357.1 | + | 17448 | 0.72 | 0.123586 |
Target: 5'- cCGCCagcaucgaGGCCaGguGCCACGcCAGGGCCUg -3' miRNA: 3'- cGCGG--------CUGG-CuuCGGUGC-GUCCCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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