miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26468 3' -61.9 NC_005357.1 + 31566 1.09 0.000151
Target:  5'- cGCGCCGACCGAAGCCACGCAGGGCCUg -3'
miRNA:   3'- -CGCGGCUGGCUUCGGUGCGUCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 32551 0.71 0.153483
Target:  5'- cGCGCCuGGCCGAgaAGCagCGCGCcGGuGCCa -3'
miRNA:   3'- -CGCGG-CUGGCU--UCG--GUGCGuCC-CGGa -5'
26468 3' -61.9 NC_005357.1 + 5126 0.7 0.157652
Target:  5'- gGCGCCGuugaACUGcaacguGCCGCGCAGGcgGCCg -3'
miRNA:   3'- -CGCGGC----UGGCuu----CGGUGCGUCC--CGGa -5'
26468 3' -61.9 NC_005357.1 + 41317 0.66 0.33763
Target:  5'- cGgGCCGAUgcgCGAcauGCCGCGCGacacGGCCa -3'
miRNA:   3'- -CgCGGCUG---GCUu--CGGUGCGUc---CCGGa -5'
26468 3' -61.9 NC_005357.1 + 30135 0.73 0.093817
Target:  5'- aCGCCG-CCGuAGCCggcACGCuGGGCCa -3'
miRNA:   3'- cGCGGCuGGCuUCGG---UGCGuCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 30413 0.73 0.093817
Target:  5'- uCGCCGGCCacGGCCGCGCugcuGGCCg -3'
miRNA:   3'- cGCGGCUGGcuUCGGUGCGuc--CCGGa -5'
26468 3' -61.9 NC_005357.1 + 16824 0.73 0.107741
Target:  5'- cGCGCCG-CCGugguuGCCACuGCcuGGGCCg -3'
miRNA:   3'- -CGCGGCuGGCuu---CGGUG-CGu-CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 37552 0.73 0.110749
Target:  5'- -gGCCG-CCGucGCCGCGCuGGGCa- -3'
miRNA:   3'- cgCGGCuGGCuuCGGUGCGuCCCGga -5'
26468 3' -61.9 NC_005357.1 + 21240 0.72 0.117004
Target:  5'- cGCGCaGACCagcagcAGGCCGCGCAGcaGGCCg -3'
miRNA:   3'- -CGCGgCUGGc-----UUCGGUGCGUC--CCGGa -5'
26468 3' -61.9 NC_005357.1 + 26139 0.71 0.148213
Target:  5'- cGCGacgaCGACCGGguagccuuccggguGGCCGCGCGcGaGGCCa -3'
miRNA:   3'- -CGCg---GCUGGCU--------------UCGGUGCGU-C-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 19642 0.71 0.134106
Target:  5'- aUGCUGACCG--GCC-CGCAGGGCg- -3'
miRNA:   3'- cGCGGCUGGCuuCGGuGCGUCCCGga -5'
26468 3' -61.9 NC_005357.1 + 13317 0.72 0.117004
Target:  5'- cGCGCgUGACCGGcagcaAGUCcCGCAcGGGCCUg -3'
miRNA:   3'- -CGCG-GCUGGCU-----UCGGuGCGU-CCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 34316 0.76 0.058207
Target:  5'- aCGCCGGCCGc-GCgGUGCAGGGCCUc -3'
miRNA:   3'- cGCGGCUGGCuuCGgUGCGUCCCGGA- -5'
26468 3' -61.9 NC_005357.1 + 7144 0.71 0.141571
Target:  5'- uCGUCGGCUGcGGCCugGaugacCAGGGCCg -3'
miRNA:   3'- cGCGGCUGGCuUCGGugC-----GUCCCGGa -5'
26468 3' -61.9 NC_005357.1 + 17988 0.75 0.073776
Target:  5'- aUGUCG-CCGAGGCCGCGCGcggcaccgacaaaucGGGCCg -3'
miRNA:   3'- cGCGGCuGGCUUCGGUGCGU---------------CCCGGa -5'
26468 3' -61.9 NC_005357.1 + 23737 0.72 0.113524
Target:  5'- uGCuGCUGACCGAGGcCCGCGUGGuguaacaGGCCg -3'
miRNA:   3'- -CG-CGGCUGGCUUC-GGUGCGUC-------CCGGa -5'
26468 3' -61.9 NC_005357.1 + 23379 0.71 0.145444
Target:  5'- aCGCUGAUCGAcGCCGC-CGGcGGCCg -3'
miRNA:   3'- cGCGGCUGGCUuCGGUGcGUC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 33777 0.7 0.15723
Target:  5'- aUGCCGACCGcgcgaugaAGGCCGgcgaccucgccacCGCAGcGGCCg -3'
miRNA:   3'- cGCGGCUGGC--------UUCGGU-------------GCGUC-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 33574 0.74 0.079357
Target:  5'- cGUGgCGACCGAGGCCaACGCGcuGGCCc -3'
miRNA:   3'- -CGCgGCUGGCUUCGG-UGCGUc-CCGGa -5'
26468 3' -61.9 NC_005357.1 + 9578 0.73 0.099169
Target:  5'- gGCGCCGACCGucugcGGCCAgGCGaaGCCg -3'
miRNA:   3'- -CGCGGCUGGCu----UCGGUgCGUccCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.