miRNA display CGI


Results 41 - 60 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26469 3' -60.5 NC_005357.1 + 18066 0.67 0.316223
Target:  5'- gGCGCGgGguGCGUGC-UGGGCcGCCg -3'
miRNA:   3'- -CGCGUgCguUGCACGcGUCCGcCGGg -5'
26469 3' -60.5 NC_005357.1 + 29424 0.67 0.308657
Target:  5'- uGCGCuGCGCGGCcUGUacgagaacgGCGGGCGGUUUu -3'
miRNA:   3'- -CGCG-UGCGUUGcACG---------CGUCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 7536 0.67 0.331773
Target:  5'- cGUGCGCucgGCGGCGUGCuCGauccGCGGCgCCa -3'
miRNA:   3'- -CGCGUG---CGUUGCACGcGUc---CGCCG-GG- -5'
26469 3' -60.5 NC_005357.1 + 35566 0.67 0.308657
Target:  5'- aCGUGC-CGACGUG-GUGGGgGGCCUa -3'
miRNA:   3'- cGCGUGcGUUGCACgCGUCCgCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 19589 0.67 0.308657
Target:  5'- aGCGCGCGCuguCGgcUGUcgGCAGcGCGGCg- -3'
miRNA:   3'- -CGCGUGCGuu-GC--ACG--CGUC-CGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 10816 0.67 0.31546
Target:  5'- uGC-CACGCuGCGUaaaGCaGCAGGUagggccagaagcaGGCCCa -3'
miRNA:   3'- -CGcGUGCGuUGCA---CG-CGUCCG-------------CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 12213 0.67 0.316223
Target:  5'- uCGC-CGaguGCGUGCGCGugcucaagcccGGCGGCUa -3'
miRNA:   3'- cGCGuGCgu-UGCACGCGU-----------CCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 37914 0.67 0.331773
Target:  5'- -aGCACGCcACGU-CaCGGGCGccGCCCg -3'
miRNA:   3'- cgCGUGCGuUGCAcGcGUCCGC--CGGG- -5'
26469 3' -60.5 NC_005357.1 + 40054 0.67 0.338951
Target:  5'- aCGCACGCgGGCGUcugccacGUGCAGGCcgaauugcGGCgCa -3'
miRNA:   3'- cGCGUGCG-UUGCA-------CGCGUCCG--------CCGgG- -5'
26469 3' -60.5 NC_005357.1 + 23750 0.67 0.339756
Target:  5'- -gGCcCGCGugGUGUaacaggccggggGCGGGCGaccGCCCc -3'
miRNA:   3'- cgCGuGCGUugCACG------------CGUCCGC---CGGG- -5'
26469 3' -60.5 NC_005357.1 + 36890 0.67 0.347059
Target:  5'- -gGCGgGCGACcUGgGCggaaccuGGGCGGCCg -3'
miRNA:   3'- cgCGUgCGUUGcACgCG-------UCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 28724 0.68 0.293941
Target:  5'- gGCGCACGCGAgGaugaGCGCcuuGGCaucGUCCa -3'
miRNA:   3'- -CGCGUGCGUUgCa---CGCGu--CCGc--CGGG- -5'
26469 3' -60.5 NC_005357.1 + 25866 0.68 0.293941
Target:  5'- cGCGuCGCGCuacAACGUcuauaaggaGCaAGGCGGCCUg -3'
miRNA:   3'- -CGC-GUGCG---UUGCAcg-------CG-UCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 16151 0.68 0.304184
Target:  5'- uCGCGCGCGAUGcGCgagccgaccaggccgGCGGGU-GCCCg -3'
miRNA:   3'- cGCGUGCGUUGCaCG---------------CGUCCGcCGGG- -5'
26469 3' -60.5 NC_005357.1 + 20655 0.68 0.286791
Target:  5'- -gGaCAUcaGCAcCGUGC-CGGGCGGCCUg -3'
miRNA:   3'- cgC-GUG--CGUuGCACGcGUCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 18330 0.68 0.266163
Target:  5'- cGCGCAUGUAGCGggGUGCccGUGcCCCg -3'
miRNA:   3'- -CGCGUGCGUUGCa-CGCGucCGCcGGG- -5'
26469 3' -60.5 NC_005357.1 + 19902 0.68 0.271544
Target:  5'- cGCGCGCGCugcGCGUGCucGCugcggggaugauGGCGggcaugaccaGCCCa -3'
miRNA:   3'- -CGCGUGCGu--UGCACG--CGu-----------CCGC----------CGGG- -5'
26469 3' -60.5 NC_005357.1 + 41137 0.68 0.272902
Target:  5'- cUGgGCGCGGCG-GUGUGGGCGGgCa -3'
miRNA:   3'- cGCgUGCGUUGCaCGCGUCCGCCgGg -5'
26469 3' -60.5 NC_005357.1 + 40666 0.68 0.293941
Target:  5'- cCGaCGCGCca-G-GCGCAGGCcGGCCa -3'
miRNA:   3'- cGC-GUGCGuugCaCGCGUCCG-CCGGg -5'
26469 3' -60.5 NC_005357.1 + 2022 0.68 0.30123
Target:  5'- uCGCugGCGAaGUcGCGCAGGCgauagaacacGGCgCg -3'
miRNA:   3'- cGCGugCGUUgCA-CGCGUCCG----------CCGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.