miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26469 3' -60.5 NC_005357.1 + 12298 0.66 0.38173
Target:  5'- gGUGCAgGcCGGCG-GCGUguucuGGcGCGGCCUc -3'
miRNA:   3'- -CGCGUgC-GUUGCaCGCG-----UC-CGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 8656 0.66 0.356136
Target:  5'- cGCGC-CGUAcucGCuGUGUGCA-GCGGCUg -3'
miRNA:   3'- -CGCGuGCGU---UG-CACGCGUcCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 31894 0.66 0.399461
Target:  5'- uUGCGCGUGGCG-GCGgaaAGcGUGGCCg -3'
miRNA:   3'- cGCGUGCGUUGCaCGCg--UC-CGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 16377 0.66 0.364532
Target:  5'- aGCGCAUGgAGCGcgcccgccGCGCGGGCuuugauGCCa -3'
miRNA:   3'- -CGCGUGCgUUGCa-------CGCGUCCGc-----CGGg -5'
26469 3' -60.5 NC_005357.1 + 15070 0.66 0.356136
Target:  5'- -gGCugGaCGA-GUGCuGCgAGGuCGGCCCg -3'
miRNA:   3'- cgCGugC-GUUgCACG-CG-UCC-GCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 25049 0.66 0.38173
Target:  5'- uGCGUcgGCGCGAUGcaggcauaccUGuCGCAGGCGaugguGUCCg -3'
miRNA:   3'- -CGCG--UGCGUUGC----------AC-GCGUCCGC-----CGGG- -5'
26469 3' -60.5 NC_005357.1 + 41974 0.66 0.373064
Target:  5'- aGCGCcCGCAAgcUGgccGCGCAG-CaGCCCa -3'
miRNA:   3'- -CGCGuGCGUU--GCa--CGCGUCcGcCGGG- -5'
26469 3' -60.5 NC_005357.1 + 16644 0.66 0.399461
Target:  5'- -aGCGCGC--CGcGCGCAucGCGGCCa -3'
miRNA:   3'- cgCGUGCGuuGCaCGCGUc-CGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 3562 0.66 0.356136
Target:  5'- aGCGCA-GCAGCGggcuggGCGUAcaccgauccGCGGCCg -3'
miRNA:   3'- -CGCGUgCGUUGCa-----CGCGUc--------CGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 17074 0.67 0.323928
Target:  5'- cGCGCACGaagGCGaagccgGCGCGGuucuCGGCCg -3'
miRNA:   3'- -CGCGUGCgu-UGCa-----CGCGUCc---GCCGGg -5'
26469 3' -60.5 NC_005357.1 + 12140 0.67 0.347877
Target:  5'- cGCGcCACGCGcuGCGcuuccGCGUAGGCGucggggucaguGUCCg -3'
miRNA:   3'- -CGC-GUGCGU--UGCa----CGCGUCCGC-----------CGGG- -5'
26469 3' -60.5 NC_005357.1 + 36890 0.67 0.347059
Target:  5'- -gGCGgGCGACcUGgGCggaaccuGGGCGGCCg -3'
miRNA:   3'- cgCGUgCGUUGcACgCG-------UCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 23834 0.67 0.308657
Target:  5'- uGCgGCAC-CGGCGUGaccaGCAGGCaGGCg- -3'
miRNA:   3'- -CG-CGUGcGUUGCACg---CGUCCG-CCGgg -5'
26469 3' -60.5 NC_005357.1 + 37914 0.67 0.331773
Target:  5'- -aGCACGCcACGU-CaCGGGCGccGCCCg -3'
miRNA:   3'- cgCGUGCGuUGCAcGcGUCCGC--CGGG- -5'
26469 3' -60.5 NC_005357.1 + 13302 0.67 0.347877
Target:  5'- aGCGCGCcggggcCGGCGU-UGUAGGCGGCg- -3'
miRNA:   3'- -CGCGUGc-----GUUGCAcGCGUCCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 41438 0.67 0.308657
Target:  5'- gGCGCGgGCAGCGggcugacgGUGaaGGGCuGGCUCg -3'
miRNA:   3'- -CGCGUgCGUUGCa-------CGCg-UCCG-CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 8885 0.67 0.339756
Target:  5'- gGCGCGgGCAucauugugaAUG-GCGCuaucGGCGGCgCg -3'
miRNA:   3'- -CGCGUgCGU---------UGCaCGCGu---CCGCCGgG- -5'
26469 3' -60.5 NC_005357.1 + 3516 0.67 0.339756
Target:  5'- aGCGCGagaacccgagaGCGACGUGCcguucCAGGCGccGCCg -3'
miRNA:   3'- -CGCGUg----------CGUUGCACGc----GUCCGC--CGGg -5'
26469 3' -60.5 NC_005357.1 + 15141 0.67 0.316223
Target:  5'- aUGCugGCGGCGgaUGCGCccaGGGCgacGGCUg -3'
miRNA:   3'- cGCGugCGUUGC--ACGCG---UCCG---CCGGg -5'
26469 3' -60.5 NC_005357.1 + 35807 0.67 0.316223
Target:  5'- cCGCGCGCAGCGccacGCGCccGCuGGUCa -3'
miRNA:   3'- cGCGUGCGUUGCa---CGCGucCG-CCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.