miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26469 3' -60.5 NC_005357.1 + 5625 0.71 0.170773
Target:  5'- uCGCGCGUGGCGcgGCGCAgcuugcuGGUGGCUg -3'
miRNA:   3'- cGCGUGCGUUGCa-CGCGU-------CCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 6176 0.69 0.253089
Target:  5'- aGCGCAggccggucuugcCGCAGCGUuuGCAGGUgacGGCgCg -3'
miRNA:   3'- -CGCGU------------GCGUUGCAcgCGUCCG---CCGgG- -5'
26469 3' -60.5 NC_005357.1 + 6372 0.7 0.222713
Target:  5'- gGCcCACGuCGGCaaucagGCGCAGGCcggccGGCCCg -3'
miRNA:   3'- -CGcGUGC-GUUGca----CGCGUCCG-----CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 7472 0.69 0.246752
Target:  5'- uGCGcCGCGUAGUG-GCGguGGUauaGGCCCc -3'
miRNA:   3'- -CGC-GUGCGUUGCaCGCguCCG---CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 7536 0.67 0.331773
Target:  5'- cGUGCGCucgGCGGCGUGCuCGauccGCGGCgCCa -3'
miRNA:   3'- -CGCGUG---CGUUGCACGcGUc---CGCCG-GG- -5'
26469 3' -60.5 NC_005357.1 + 8183 0.69 0.259559
Target:  5'- gGCGCugGCGuccugcccguuCGUcaGCGaCAuGGCGGCCa -3'
miRNA:   3'- -CGCGugCGUu----------GCA--CGC-GU-CCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 8224 0.74 0.116723
Target:  5'- cGCGCugGuCGGCGgccgucagcagcuUGCGCuucaaGCGGCCCa -3'
miRNA:   3'- -CGCGugC-GUUGC-------------ACGCGuc---CGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 8392 0.69 0.22853
Target:  5'- cGCGCugGCuGCGUaGC-CAGuCGGCCa -3'
miRNA:   3'- -CGCGugCGuUGCA-CGcGUCcGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 8434 0.72 0.14569
Target:  5'- gGCGUcgcggaacaucgGCGCGAUGUcgGCGUcgAGGUGGCCUg -3'
miRNA:   3'- -CGCG------------UGCGUUGCA--CGCG--UCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 8656 0.66 0.356136
Target:  5'- cGCGC-CGUAcucGCuGUGUGCA-GCGGCUg -3'
miRNA:   3'- -CGCGuGCGU---UG-CACGCGUcCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 8750 0.72 0.149691
Target:  5'- gGCGCGCGCGuauucACGUGCcgcuucggGCAGcacGCGGCgCa -3'
miRNA:   3'- -CGCGUGCGU-----UGCACG--------CGUC---CGCCGgG- -5'
26469 3' -60.5 NC_005357.1 + 8885 0.67 0.339756
Target:  5'- gGCGCGgGCAucauugugaAUG-GCGCuaucGGCGGCgCg -3'
miRNA:   3'- -CGCGUgCGU---------UGCaCGCGu---CCGCCGgG- -5'
26469 3' -60.5 NC_005357.1 + 8997 0.67 0.323151
Target:  5'- cGC-CGCGCGGgG-GCGCuuccagcAGGCGGCgCa -3'
miRNA:   3'- -CGcGUGCGUUgCaCGCG-------UCCGCCGgG- -5'
26469 3' -60.5 NC_005357.1 + 9219 0.75 0.099104
Target:  5'- gGCGCACGUucuGCG-GCGCGcccGGCGGCa- -3'
miRNA:   3'- -CGCGUGCGu--UGCaCGCGU---CCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 9324 0.75 0.088619
Target:  5'- gGCGCACGuCGGCGcG-GCGGGCGGCg- -3'
miRNA:   3'- -CGCGUGC-GUUGCaCgCGUCCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 10028 0.68 0.30123
Target:  5'- -gGCGCGCGGCuuuuuuucgGUGCuggcuuccuGCuGGGCGGCCg -3'
miRNA:   3'- cgCGUGCGUUG---------CACG---------CG-UCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 10721 0.73 0.123672
Target:  5'- cCGCGCGCGGCGgGCugguCAGGCGGUgCu -3'
miRNA:   3'- cGCGUGCGUUGCaCGc---GUCCGCCGgG- -5'
26469 3' -60.5 NC_005357.1 + 10816 0.67 0.31546
Target:  5'- uGC-CACGCuGCGUaaaGCaGCAGGUagggccagaagcaGGCCCa -3'
miRNA:   3'- -CGcGUGCGuUGCA---CG-CGUCCG-------------CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 11166 0.86 0.013261
Target:  5'- uGCGCACGUuGCGUGCGCuGGuCGGCCg -3'
miRNA:   3'- -CGCGUGCGuUGCACGCGuCC-GCCGGg -5'
26469 3' -60.5 NC_005357.1 + 11503 0.72 0.157994
Target:  5'- cCGCAaaggGCAGCGccUGCGCuGGCgugaGGCCCu -3'
miRNA:   3'- cGCGUg---CGUUGC--ACGCGuCCG----CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.