miRNA display CGI


Results 1 - 20 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26469 3' -60.5 NC_005357.1 + 334 0.68 0.279778
Target:  5'- -gGCugGCGgugGCGUcGCGCagcAGGCcguccgccaGGCCCg -3'
miRNA:   3'- cgCGugCGU---UGCA-CGCG---UCCG---------CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 507 0.77 0.061374
Target:  5'- uGCGC-CGCGGCG-GCuuGCAGGCGGUUCu -3'
miRNA:   3'- -CGCGuGCGUUGCaCG--CGUCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 524 0.74 0.117046
Target:  5'- uCGCugGCcgaauaccucgGACGUGCGCGGGCcGCUg -3'
miRNA:   3'- cGCGugCG-----------UUGCACGCGUCCGcCGGg -5'
26469 3' -60.5 NC_005357.1 + 1081 0.68 0.284672
Target:  5'- aCGCGCGCGGuagauugccuuggcCGUGuCGCGcGGCaugucgcgcaucGGCCCg -3'
miRNA:   3'- cGCGUGCGUU--------------GCAC-GCGU-CCG------------CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 1086 0.72 0.1623
Target:  5'- gGCGCGCGUAcuucauguugGCG-GCgGUAGGCGGCa- -3'
miRNA:   3'- -CGCGUGCGU----------UGCaCG-CGUCCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 1687 0.66 0.380858
Target:  5'- cGCGCAgGUAGucgagaaauucgcCGUGgGCcGGCGuGCCg -3'
miRNA:   3'- -CGCGUgCGUU-------------GCACgCGuCCGC-CGGg -5'
26469 3' -60.5 NC_005357.1 + 2022 0.68 0.30123
Target:  5'- uCGCugGCGAaGUcGCGCAGGCgauagaacacGGCgCg -3'
miRNA:   3'- cGCGugCGUUgCA-CGCGUCCG----------CCGgG- -5'
26469 3' -60.5 NC_005357.1 + 2226 0.66 0.39053
Target:  5'- -aGCAC-C-ACGcGCaGCAGGCGGCgCg -3'
miRNA:   3'- cgCGUGcGuUGCaCG-CGUCCGCCGgG- -5'
26469 3' -60.5 NC_005357.1 + 2372 0.68 0.272902
Target:  5'- cUGCACGUGgcagacgcccGCGUGCGUacccuugucaGGGCGGCa- -3'
miRNA:   3'- cGCGUGCGU----------UGCACGCG----------UCCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 2417 0.68 0.286791
Target:  5'- aGCGUAgGUGuACG-GCaGCAGGCcGGCCUc -3'
miRNA:   3'- -CGCGUgCGU-UGCaCG-CGUCCG-CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 2466 0.68 0.272902
Target:  5'- uUGCACaaGGCGUGCuGCacaAGGCGGUCUu -3'
miRNA:   3'- cGCGUGcgUUGCACG-CG---UCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 2776 0.73 0.120316
Target:  5'- cCGaCACcuCGACGuUGCGCAGGUGcGCCCa -3'
miRNA:   3'- cGC-GUGc-GUUGC-ACGCGUCCGC-CGGG- -5'
26469 3' -60.5 NC_005357.1 + 2828 0.68 0.272902
Target:  5'- gGUGCuCGCGGCcacGCGCA-GCGGCgCCa -3'
miRNA:   3'- -CGCGuGCGUUGca-CGCGUcCGCCG-GG- -5'
26469 3' -60.5 NC_005357.1 + 3516 0.67 0.339756
Target:  5'- aGCGCGagaacccgagaGCGACGUGCcguucCAGGCGccGCCg -3'
miRNA:   3'- -CGCGUg----------CGUUGCACGc----GUCCGC--CGGg -5'
26469 3' -60.5 NC_005357.1 + 3562 0.66 0.356136
Target:  5'- aGCGCA-GCAGCGggcuggGCGUAcaccgauccGCGGCCg -3'
miRNA:   3'- -CGCGUgCGUUGCa-----CGCGUc--------CGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 4044 0.72 0.141786
Target:  5'- -gGC-CGCGGCGaGCgGCAGGCcagcGGCCCa -3'
miRNA:   3'- cgCGuGCGUUGCaCG-CGUCCG----CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 4517 0.7 0.195495
Target:  5'- gGCGCccgugaACGUGGCGUGC-UGGGCGGUCg -3'
miRNA:   3'- -CGCG------UGCGUUGCACGcGUCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 5126 0.82 0.028247
Target:  5'- gGCGCcguugaACuGCAACGUgccGCGCAGGCGGCCg -3'
miRNA:   3'- -CGCG------UG-CGUUGCA---CGCGUCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 5338 0.66 0.356136
Target:  5'- gGCGCA-GCAugGcaucGCGCuGcGUGGCCg -3'
miRNA:   3'- -CGCGUgCGUugCa---CGCGuC-CGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 5418 0.72 0.14569
Target:  5'- uGCGUACGCuccACG-GCGCGgauGGCGGCg- -3'
miRNA:   3'- -CGCGUGCGu--UGCaCGCGU---CCGCCGgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.