miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26469 3' -60.5 NC_005357.1 + 41974 0.66 0.373064
Target:  5'- aGCGCcCGCAAgcUGgccGCGCAG-CaGCCCa -3'
miRNA:   3'- -CGCGuGCGUU--GCa--CGCGUCcGcCGGG- -5'
26469 3' -60.5 NC_005357.1 + 41826 0.71 0.185447
Target:  5'- cGCuGCugGcCGACc--CGCAGGCGGCCa -3'
miRNA:   3'- -CG-CGugC-GUUGcacGCGUCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 41756 0.66 0.399461
Target:  5'- gGCGC-CGC------CGUAGGCGGCCUg -3'
miRNA:   3'- -CGCGuGCGuugcacGCGUCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 41613 0.71 0.165376
Target:  5'- uGCGCGCGCucaagcccAgccaccugcugacgGCGauUGCGCA-GCGGCCCg -3'
miRNA:   3'- -CGCGUGCG--------U--------------UGC--ACGCGUcCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 41438 0.67 0.308657
Target:  5'- gGCGCGgGCAGCGggcugacgGUGaaGGGCuGGCUCg -3'
miRNA:   3'- -CGCGUgCGUUGCa-------CGCg-UCCG-CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 41137 0.68 0.272902
Target:  5'- cUGgGCGCGGCG-GUGUGGGCGGgCa -3'
miRNA:   3'- cGCgUGCGUUGCaCGCGUCCGCCgGg -5'
26469 3' -60.5 NC_005357.1 + 40666 0.68 0.293941
Target:  5'- cCGaCGCGCca-G-GCGCAGGCcGGCCa -3'
miRNA:   3'- cGC-GUGCGuugCaCGCGUCCG-CCGGg -5'
26469 3' -60.5 NC_005357.1 + 40054 0.67 0.338951
Target:  5'- aCGCACGCgGGCGUcugccacGUGCAGGCcgaauugcGGCgCa -3'
miRNA:   3'- cGCGUGCG-UUGCA-------CGCGUCCG--------CCGgG- -5'
26469 3' -60.5 NC_005357.1 + 39592 0.72 0.149691
Target:  5'- gGUGCugGCGcCGcUGCGCGuGGCcgcgagcaccuGGCCCg -3'
miRNA:   3'- -CGCGugCGUuGC-ACGCGU-CCG-----------CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 39490 0.69 0.240548
Target:  5'- cGUGcCGCGCGACGcgGUGUGGGcCGGCa- -3'
miRNA:   3'- -CGC-GUGCGUUGCa-CGCGUCC-GCCGgg -5'
26469 3' -60.5 NC_005357.1 + 38882 0.66 0.38173
Target:  5'- gGCGCgguugGCGgGAC-UGCGCGGuguGCGGCUg -3'
miRNA:   3'- -CGCG-----UGCgUUGcACGCGUC---CGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 38397 0.7 0.194981
Target:  5'- uGCGCucgacccGCGCGGCaUGaCGCuGGUGGCCg -3'
miRNA:   3'- -CGCG-------UGCGUUGcAC-GCGuCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 38304 0.68 0.266163
Target:  5'- uGCGCcgggaaGCAACGcugcaGCGCAGGCuGGCg- -3'
miRNA:   3'- -CGCGug----CGUUGCa----CGCGUCCG-CCGgg -5'
26469 3' -60.5 NC_005357.1 + 38221 0.7 0.216461
Target:  5'- cCGCAagcCGCGACGUGCucgcggccaacauGCccgccaucgAGGCGGCCg -3'
miRNA:   3'- cGCGU---GCGUUGCACG-------------CG---------UCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 37987 0.66 0.39053
Target:  5'- cCGCACGCcuGGCG-GUGUu-GCGGCCg -3'
miRNA:   3'- cGCGUGCG--UUGCaCGCGucCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 37914 0.67 0.331773
Target:  5'- -aGCACGCcACGU-CaCGGGCGccGCCCg -3'
miRNA:   3'- cgCGUGCGuUGCAcGcGUCCGC--CGGG- -5'
26469 3' -60.5 NC_005357.1 + 37786 0.68 0.286791
Target:  5'- ---gACGCGAUGgccGaCGCAGcGUGGCCCa -3'
miRNA:   3'- cgcgUGCGUUGCa--C-GCGUC-CGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 37049 0.77 0.069541
Target:  5'- cGCGCAC-CAgugacauaacccuggGCGcgGUGCAGGCGGCCa -3'
miRNA:   3'- -CGCGUGcGU---------------UGCa-CGCGUCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 36890 0.67 0.347059
Target:  5'- -gGCGgGCGACcUGgGCggaaccuGGGCGGCCg -3'
miRNA:   3'- cgCGUgCGUUGcACgCG-------UCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 36172 0.66 0.354473
Target:  5'- cGCGCAgaucaacCGCAcCGUuaccggcGUGCAGGCccuGGCCg -3'
miRNA:   3'- -CGCGU-------GCGUuGCA-------CGCGUCCG---CCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.