miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26469 3' -60.5 NC_005357.1 + 31268 1.13 0.000105
Target:  5'- aGCGCACGCAACGUGCGCAGGCGGCCCa -3'
miRNA:   3'- -CGCGUGCGUUGCACGCGUCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 11166 0.86 0.013261
Target:  5'- uGCGCACGUuGCGUGCGCuGGuCGGCCg -3'
miRNA:   3'- -CGCGUGCGuUGCACGCGuCC-GCCGGg -5'
26469 3' -60.5 NC_005357.1 + 5126 0.82 0.028247
Target:  5'- gGCGCcguugaACuGCAACGUgccGCGCAGGCGGCCg -3'
miRNA:   3'- -CGCG------UG-CGUUGCA---CGCGUCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 31042 0.78 0.057975
Target:  5'- cGCGCGgGcCAACGUGCGCGaa-GGCCCg -3'
miRNA:   3'- -CGCGUgC-GUUGCACGCGUccgCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 14620 0.77 0.061374
Target:  5'- aGCGCGCGCGaggACGUGCuGCGGcugcGCGGCgCg -3'
miRNA:   3'- -CGCGUGCGU---UGCACG-CGUC----CGCCGgG- -5'
26469 3' -60.5 NC_005357.1 + 507 0.77 0.061374
Target:  5'- uGCGC-CGCGGCG-GCuuGCAGGCGGUUCu -3'
miRNA:   3'- -CGCGuGCGUUGCaCG--CGUCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 34380 0.77 0.064964
Target:  5'- gGCGCGCGUcaugGACG-GCgGCAaggacGGCGGCCCu -3'
miRNA:   3'- -CGCGUGCG----UUGCaCG-CGU-----CCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 14162 0.77 0.068757
Target:  5'- aGCGCGCGguCAugGUGCGCAacauGGUGaGCCUg -3'
miRNA:   3'- -CGCGUGC--GUugCACGCGU----CCGC-CGGG- -5'
26469 3' -60.5 NC_005357.1 + 37049 0.77 0.069541
Target:  5'- cGCGCAC-CAgugacauaacccuggGCGcgGUGCAGGCGGCCa -3'
miRNA:   3'- -CGCGUGcGU---------------UGCa-CGCGUCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 15676 0.76 0.074849
Target:  5'- uGCGCcuuauggaauCGCAGCGgGCGCGcuggcGGUGGCCCg -3'
miRNA:   3'- -CGCGu---------GCGUUGCaCGCGU-----CCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 27479 0.76 0.076992
Target:  5'- cGCGCACGCAccacGCGagGaUGCcGGCGGCCUc -3'
miRNA:   3'- -CGCGUGCGU----UGCa-C-GCGuCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 9324 0.75 0.088619
Target:  5'- gGCGCACGuCGGCGcG-GCGGGCGGCg- -3'
miRNA:   3'- -CGCGUGC-GUUGCaCgCGUCCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 9219 0.75 0.099104
Target:  5'- gGCGCACGUucuGCG-GCGCGcccGGCGGCa- -3'
miRNA:   3'- -CGCGUGCGu--UGCaCGCGU---CCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 30907 0.74 0.113544
Target:  5'- cCGCuCGCAgggccucACGccaGCGCAGGCGcGCCCu -3'
miRNA:   3'- cGCGuGCGU-------UGCa--CGCGUCCGC-CGGG- -5'
26469 3' -60.5 NC_005357.1 + 24555 0.74 0.113858
Target:  5'- cGCGCAgCGCGGCGaugGCG-AGGCcGGCCa -3'
miRNA:   3'- -CGCGU-GCGUUGCa--CGCgUCCG-CCGGg -5'
26469 3' -60.5 NC_005357.1 + 8224 0.74 0.116723
Target:  5'- cGCGCugGuCGGCGgccgucagcagcuUGCGCuucaaGCGGCCCa -3'
miRNA:   3'- -CGCGugC-GUUGC-------------ACGCGuc---CGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 524 0.74 0.117046
Target:  5'- uCGCugGCcgaauaccucgGACGUGCGCGGGCcGCUg -3'
miRNA:   3'- cGCGugCG-----------UUGCACGCGUCCGcCGGg -5'
26469 3' -60.5 NC_005357.1 + 13870 0.74 0.117046
Target:  5'- cGUGCGCGCcGCGaUG-GCcGGCGGCCg -3'
miRNA:   3'- -CGCGUGCGuUGC-ACgCGuCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 26369 0.74 0.118344
Target:  5'- cGCGCGCgGCGgccACGUGCGCGaacuggccuacaacuGGCaGGCCa -3'
miRNA:   3'- -CGCGUG-CGU---UGCACGCGU---------------CCG-CCGGg -5'
26469 3' -60.5 NC_005357.1 + 18845 0.73 0.120316
Target:  5'- cGCgGCAUGUAGaagGC-CGGGCGGCCCa -3'
miRNA:   3'- -CG-CGUGCGUUgcaCGcGUCCGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.