miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26469 3' -60.5 NC_005357.1 + 4517 0.7 0.195495
Target:  5'- gGCGCccgugaACGUGGCGUGC-UGGGCGGUCg -3'
miRNA:   3'- -CGCG------UGCGUUGCACGcGUCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 28648 0.73 0.137979
Target:  5'- cCGCGCGCAGugccagauCG-GUGCcGGCGGCCUc -3'
miRNA:   3'- cGCGUGCGUU--------GCaCGCGuCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 8750 0.72 0.149691
Target:  5'- gGCGCGCGCGuauucACGUGCcgcuucggGCAGcacGCGGCgCa -3'
miRNA:   3'- -CGCGUGCGU-----UGCACG--------CGUC---CGCCGgG- -5'
26469 3' -60.5 NC_005357.1 + 39592 0.72 0.149691
Target:  5'- gGUGCugGCGcCGcUGCGCGuGGCcgcgagcaccuGGCCCg -3'
miRNA:   3'- -CGCGugCGUuGC-ACGCGU-CCG-----------CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 11503 0.72 0.157994
Target:  5'- cCGCAaaggGCAGCGccUGCGCuGGCgugaGGCCCu -3'
miRNA:   3'- cGCGUg---CGUUGC--ACGCGuCCG----CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 27418 0.72 0.157994
Target:  5'- uCGCGCGCcuGGCGcaccGCGCccGGCGGCCg -3'
miRNA:   3'- cGCGUGCG--UUGCa---CGCGu-CCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 41613 0.71 0.165376
Target:  5'- uGCGCGCGCucaagcccAgccaccugcugacgGCGauUGCGCA-GCGGCCCg -3'
miRNA:   3'- -CGCGUGCG--------U--------------UGC--ACGCGUcCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 27574 0.71 0.166711
Target:  5'- cGCGUAaaggGCAcCG-GCaGCAGGCGGCgCCa -3'
miRNA:   3'- -CGCGUg---CGUuGCaCG-CGUCCGCCG-GG- -5'
26469 3' -60.5 NC_005357.1 + 30422 0.71 0.185447
Target:  5'- -gGCAUgGCGAUGaGCGCGGGCagGGCCUc -3'
miRNA:   3'- cgCGUG-CGUUGCaCGCGUCCG--CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 33065 0.73 0.137979
Target:  5'- uGCGCuucaucgggucGCGCAGCGa-CGC-GGCGGCCUa -3'
miRNA:   3'- -CGCG-----------UGCGUUGCacGCGuCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 27824 0.73 0.120316
Target:  5'- cGCGCGCGCuGCccGCGguGGCgccGGCCg -3'
miRNA:   3'- -CGCGUGCGuUGcaCGCguCCG---CCGGg -5'
26469 3' -60.5 NC_005357.1 + 18845 0.73 0.120316
Target:  5'- cGCgGCAUGUAGaagGC-CGGGCGGCCCa -3'
miRNA:   3'- -CG-CGUGCGUUgcaCGcGUCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 31042 0.78 0.057975
Target:  5'- cGCGCGgGcCAACGUGCGCGaa-GGCCCg -3'
miRNA:   3'- -CGCGUgC-GUUGCACGCGUccgCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 507 0.77 0.061374
Target:  5'- uGCGC-CGCGGCG-GCuuGCAGGCGGUUCu -3'
miRNA:   3'- -CGCGuGCGUUGCaCG--CGUCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 37049 0.77 0.069541
Target:  5'- cGCGCAC-CAgugacauaacccuggGCGcgGUGCAGGCGGCCa -3'
miRNA:   3'- -CGCGUGcGU---------------UGCa-CGCGUCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 27479 0.76 0.076992
Target:  5'- cGCGCACGCAccacGCGagGaUGCcGGCGGCCUc -3'
miRNA:   3'- -CGCGUGCGU----UGCa-C-GCGuCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 9324 0.75 0.088619
Target:  5'- gGCGCACGuCGGCGcG-GCGGGCGGCg- -3'
miRNA:   3'- -CGCGUGC-GUUGCaCgCGUCCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 9219 0.75 0.099104
Target:  5'- gGCGCACGUucuGCG-GCGCGcccGGCGGCa- -3'
miRNA:   3'- -CGCGUGCGu--UGCaCGCGU---CCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 24555 0.74 0.113858
Target:  5'- cGCGCAgCGCGGCGaugGCG-AGGCcGGCCa -3'
miRNA:   3'- -CGCGU-GCGUUGCa--CGCgUCCG-CCGGg -5'
26469 3' -60.5 NC_005357.1 + 8224 0.74 0.116723
Target:  5'- cGCGCugGuCGGCGgccgucagcagcuUGCGCuucaaGCGGCCCa -3'
miRNA:   3'- -CGCGugC-GUUGC-------------ACGCGuc---CGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.