miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26469 3' -60.5 NC_005357.1 + 31268 1.13 0.000105
Target:  5'- aGCGCACGCAACGUGCGCAGGCGGCCCa -3'
miRNA:   3'- -CGCGUGCGUUGCACGCGUCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 5625 0.71 0.170773
Target:  5'- uCGCGCGUGGCGcgGCGCAgcuugcuGGUGGCUg -3'
miRNA:   3'- cGCGUGCGUUGCa-CGCGU-------CCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 41826 0.71 0.185447
Target:  5'- cGCuGCugGcCGACc--CGCAGGCGGCCa -3'
miRNA:   3'- -CG-CGugC-GUUGcacGCGUCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 41756 0.66 0.399461
Target:  5'- gGCGC-CGC------CGUAGGCGGCCUg -3'
miRNA:   3'- -CGCGuGCGuugcacGCGUCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 14162 0.77 0.068757
Target:  5'- aGCGCGCGguCAugGUGCGCAacauGGUGaGCCUg -3'
miRNA:   3'- -CGCGUGC--GUugCACGCGU----CCGC-CGGG- -5'
26469 3' -60.5 NC_005357.1 + 15676 0.76 0.074849
Target:  5'- uGCGCcuuauggaauCGCAGCGgGCGCGcuggcGGUGGCCCg -3'
miRNA:   3'- -CGCGu---------GCGUUGCaCGCGU-----CCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 524 0.74 0.117046
Target:  5'- uCGCugGCcgaauaccucgGACGUGCGCGGGCcGCUg -3'
miRNA:   3'- cGCGugCG-----------UUGCACGCGUCCGcCGGg -5'
26469 3' -60.5 NC_005357.1 + 13870 0.74 0.117046
Target:  5'- cGUGCGCGCcGCGaUG-GCcGGCGGCCg -3'
miRNA:   3'- -CGCGUGCGuUGC-ACgCGuCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 10721 0.73 0.123672
Target:  5'- cCGCGCGCGGCGgGCugguCAGGCGGUgCu -3'
miRNA:   3'- cGCGUGCGUUGCaCGc---GUCCGCCGgG- -5'
26469 3' -60.5 NC_005357.1 + 28863 0.71 0.166711
Target:  5'- aGCGCGCGUucaacaucgcCGUGgGCaccgagucAGGCGGCCg -3'
miRNA:   3'- -CGCGUGCGuu--------GCACgCG--------UCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 5418 0.72 0.14569
Target:  5'- uGCGUACGCuccACG-GCGCGgauGGCGGCg- -3'
miRNA:   3'- -CGCGUGCGu--UGCaCGCGU---CCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 2776 0.73 0.120316
Target:  5'- cCGaCACcuCGACGuUGCGCAGGUGcGCCCa -3'
miRNA:   3'- cGC-GUGc-GUUGC-ACGCGUCCGC-CGGG- -5'
26469 3' -60.5 NC_005357.1 + 5126 0.82 0.028247
Target:  5'- gGCGCcguugaACuGCAACGUgccGCGCAGGCGGCCg -3'
miRNA:   3'- -CGCG------UG-CGUUGCA---CGCGUCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 8434 0.72 0.14569
Target:  5'- gGCGUcgcggaacaucgGCGCGAUGUcgGCGUcgAGGUGGCCUg -3'
miRNA:   3'- -CGCG------------UGCGUUGCA--CGCG--UCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 14620 0.77 0.061374
Target:  5'- aGCGCGCGCGaggACGUGCuGCGGcugcGCGGCgCg -3'
miRNA:   3'- -CGCGUGCGU---UGCACG-CGUC----CGCCGgG- -5'
26469 3' -60.5 NC_005357.1 + 26369 0.74 0.118344
Target:  5'- cGCGCGCgGCGgccACGUGCGCGaacuggccuacaacuGGCaGGCCa -3'
miRNA:   3'- -CGCGUG-CGU---UGCACGCGU---------------CCG-CCGGg -5'
26469 3' -60.5 NC_005357.1 + 1086 0.72 0.1623
Target:  5'- gGCGCGCGUAcuucauguugGCG-GCgGUAGGCGGCa- -3'
miRNA:   3'- -CGCGUGCGU----------UGCaCG-CGUCCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 14950 0.71 0.171229
Target:  5'- -gGCAuccuCGCGugGUGCGU-GGCGGCgCg -3'
miRNA:   3'- cgCGU----GCGUugCACGCGuCCGCCGgG- -5'
26469 3' -60.5 NC_005357.1 + 34380 0.77 0.064964
Target:  5'- gGCGCGCGUcaugGACG-GCgGCAaggacGGCGGCCCu -3'
miRNA:   3'- -CGCGUGCG----UUGCaCG-CGU-----CCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 30907 0.74 0.113544
Target:  5'- cCGCuCGCAgggccucACGccaGCGCAGGCGcGCCCu -3'
miRNA:   3'- cGCGuGCGU-------UGCa--CGCGUCCGC-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.