miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26469 3' -60.5 NC_005357.1 + 23523 0.66 0.356136
Target:  5'- -aGCGCGCcuuccaGGCG-GCGCAcGCGGUCg -3'
miRNA:   3'- cgCGUGCG------UUGCaCGCGUcCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 3562 0.66 0.356136
Target:  5'- aGCGCA-GCAGCGggcuggGCGUAcaccgauccGCGGCCg -3'
miRNA:   3'- -CGCGUgCGUUGCa-----CGCGUc--------CGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 12286 0.66 0.38173
Target:  5'- uUGCugGCccAGCGUGCcgGCuacGGCGGCg- -3'
miRNA:   3'- cGCGugCG--UUGCACG--CGu--CCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 28362 0.66 0.400361
Target:  5'- aGCGCGCggaugguuuccuugGCGAgGUGUuccaguucgacgccgGCGGcGCGGCgCCa -3'
miRNA:   3'- -CGCGUG--------------CGUUgCACG---------------CGUC-CGCCG-GG- -5'
26469 3' -60.5 NC_005357.1 + 14905 0.66 0.399461
Target:  5'- uGCGCG-GCGAUcUGCuGCuGGCcGGCCUc -3'
miRNA:   3'- -CGCGUgCGUUGcACG-CGuCCG-CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 38882 0.66 0.38173
Target:  5'- gGCGCgguugGCGgGAC-UGCGCGGuguGCGGCUg -3'
miRNA:   3'- -CGCG-----UGCgUUGcACGCGUC---CGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 17802 0.66 0.372205
Target:  5'- aGCGCGCGCAguauuccgccugcACGgaacccucGgGCGGGUugauGCCCg -3'
miRNA:   3'- -CGCGUGCGU-------------UGCa-------CgCGUCCGc---CGGG- -5'
26469 3' -60.5 NC_005357.1 + 15070 0.66 0.356136
Target:  5'- -gGCugGaCGA-GUGCuGCgAGGuCGGCCCg -3'
miRNA:   3'- cgCGugC-GUUgCACG-CG-UCC-GCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 36172 0.66 0.354473
Target:  5'- cGCGCAgaucaacCGCAcCGUuaccggcGUGCAGGCccuGGCCg -3'
miRNA:   3'- -CGCGU-------GCGUuGCA-------CGCGUCCG---CCGGg -5'
26469 3' -60.5 NC_005357.1 + 14386 0.66 0.38173
Target:  5'- cGCGCcgcggaacguagGCGUAGCGaagcuggGCGUcgccAGGCGcGCCUg -3'
miRNA:   3'- -CGCG------------UGCGUUGCa------CGCG----UCCGC-CGGG- -5'
26469 3' -60.5 NC_005357.1 + 1687 0.66 0.380858
Target:  5'- cGCGCAgGUAGucgagaaauucgcCGUGgGCcGGCGuGCCg -3'
miRNA:   3'- -CGCGUgCGUU-------------GCACgCGuCCGC-CGGg -5'
26469 3' -60.5 NC_005357.1 + 16377 0.66 0.364532
Target:  5'- aGCGCAUGgAGCGcgcccgccGCGCGGGCuuugauGCCa -3'
miRNA:   3'- -CGCGUGCgUUGCa-------CGCGUCCGc-----CGGg -5'
26469 3' -60.5 NC_005357.1 + 5338 0.66 0.356136
Target:  5'- gGCGCA-GCAugGcaucGCGCuGcGUGGCCg -3'
miRNA:   3'- -CGCGUgCGUugCa---CGCGuC-CGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 24117 0.66 0.359478
Target:  5'- uGCGCGCGUAGgggucguaguccagcCGgcUGCGCGccUGGCCCa -3'
miRNA:   3'- -CGCGUGCGUU---------------GC--ACGCGUccGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 2226 0.66 0.39053
Target:  5'- -aGCAC-C-ACGcGCaGCAGGCGGCgCg -3'
miRNA:   3'- cgCGUGcGuUGCaCG-CGUCCGCCGgG- -5'
26469 3' -60.5 NC_005357.1 + 37987 0.66 0.39053
Target:  5'- cCGCACGCcuGGCG-GUGUu-GCGGCCg -3'
miRNA:   3'- cGCGUGCG--UUGCaCGCGucCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 41974 0.66 0.373064
Target:  5'- aGCGCcCGCAAgcUGgccGCGCAG-CaGCCCa -3'
miRNA:   3'- -CGCGuGCGUU--GCa--CGCGUCcGcCGGG- -5'
26469 3' -60.5 NC_005357.1 + 8656 0.66 0.356136
Target:  5'- cGCGC-CGUAcucGCuGUGUGCA-GCGGCUg -3'
miRNA:   3'- -CGCGuGCGU---UG-CACGCGUcCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 41756 0.66 0.399461
Target:  5'- gGCGC-CGC------CGUAGGCGGCCUg -3'
miRNA:   3'- -CGCGuGCGuugcacGCGUCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 17634 0.66 0.399461
Target:  5'- uUGC-CGCAuCGUGCgGCAGuaCGGCCa -3'
miRNA:   3'- cGCGuGCGUuGCACG-CGUCc-GCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.