miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26469 3' -60.5 NC_005357.1 + 2776 0.73 0.120316
Target:  5'- cCGaCACcuCGACGuUGCGCAGGUGcGCCCa -3'
miRNA:   3'- cGC-GUGc-GUUGC-ACGCGUCCGC-CGGG- -5'
26469 3' -60.5 NC_005357.1 + 27824 0.73 0.120316
Target:  5'- cGCGCGCGCuGCccGCGguGGCgccGGCCg -3'
miRNA:   3'- -CGCGUGCGuUGcaCGCguCCG---CCGGg -5'
26469 3' -60.5 NC_005357.1 + 10721 0.73 0.123672
Target:  5'- cCGCGCGCGGCGgGCugguCAGGCGGUgCu -3'
miRNA:   3'- cGCGUGCGUUGCaCGc---GUCCGCCGgG- -5'
26469 3' -60.5 NC_005357.1 + 33065 0.73 0.137979
Target:  5'- uGCGCuucaucgggucGCGCAGCGa-CGC-GGCGGCCUa -3'
miRNA:   3'- -CGCG-----------UGCGUUGCacGCGuCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 28648 0.73 0.137979
Target:  5'- cCGCGCGCAGugccagauCG-GUGCcGGCGGCCUc -3'
miRNA:   3'- cGCGUGCGUU--------GCaCGCGuCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 4044 0.72 0.141786
Target:  5'- -gGC-CGCGGCGaGCgGCAGGCcagcGGCCCa -3'
miRNA:   3'- cgCGuGCGUUGCaCG-CGUCCG----CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 5418 0.72 0.14569
Target:  5'- uGCGUACGCuccACG-GCGCGgauGGCGGCg- -3'
miRNA:   3'- -CGCGUGCGu--UGCaCGCGU---CCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 8434 0.72 0.14569
Target:  5'- gGCGUcgcggaacaucgGCGCGAUGUcgGCGUcgAGGUGGCCUg -3'
miRNA:   3'- -CGCG------------UGCGUUGCA--CGCG--UCCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 8750 0.72 0.149691
Target:  5'- gGCGCGCGCGuauucACGUGCcgcuucggGCAGcacGCGGCgCa -3'
miRNA:   3'- -CGCGUGCGU-----UGCACG--------CGUC---CGCCGgG- -5'
26469 3' -60.5 NC_005357.1 + 39592 0.72 0.149691
Target:  5'- gGUGCugGCGcCGcUGCGCGuGGCcgcgagcaccuGGCCCg -3'
miRNA:   3'- -CGCGugCGUuGC-ACGCGU-CCG-----------CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 11503 0.72 0.157994
Target:  5'- cCGCAaaggGCAGCGccUGCGCuGGCgugaGGCCCu -3'
miRNA:   3'- cGCGUg---CGUUGC--ACGCGuCCG----CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 27418 0.72 0.157994
Target:  5'- uCGCGCGCcuGGCGcaccGCGCccGGCGGCCg -3'
miRNA:   3'- cGCGUGCG--UUGCa---CGCGu-CCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 1086 0.72 0.1623
Target:  5'- gGCGCGCGUAcuucauguugGCG-GCgGUAGGCGGCa- -3'
miRNA:   3'- -CGCGUGCGU----------UGCaCG-CGUCCGCCGgg -5'
26469 3' -60.5 NC_005357.1 + 41613 0.71 0.165376
Target:  5'- uGCGCGCGCucaagcccAgccaccugcugacgGCGauUGCGCA-GCGGCCCg -3'
miRNA:   3'- -CGCGUGCG--------U--------------UGC--ACGCGUcCGCCGGG- -5'
26469 3' -60.5 NC_005357.1 + 27574 0.71 0.166711
Target:  5'- cGCGUAaaggGCAcCG-GCaGCAGGCGGCgCCa -3'
miRNA:   3'- -CGCGUg---CGUuGCaCG-CGUCCGCCG-GG- -5'
26469 3' -60.5 NC_005357.1 + 28863 0.71 0.166711
Target:  5'- aGCGCGCGUucaacaucgcCGUGgGCaccgagucAGGCGGCCg -3'
miRNA:   3'- -CGCGUGCGuu--------GCACgCG--------UCCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 5625 0.71 0.170773
Target:  5'- uCGCGCGUGGCGcgGCGCAgcuugcuGGUGGCUg -3'
miRNA:   3'- cGCGUGCGUUGCa-CGCGU-------CCGCCGGg -5'
26469 3' -60.5 NC_005357.1 + 14950 0.71 0.171229
Target:  5'- -gGCAuccuCGCGugGUGCGU-GGCGGCgCg -3'
miRNA:   3'- cgCGU----GCGUugCACGCGuCCGCCGgG- -5'
26469 3' -60.5 NC_005357.1 + 30422 0.71 0.185447
Target:  5'- -gGCAUgGCGAUGaGCGCGGGCagGGCCUc -3'
miRNA:   3'- cgCGUG-CGUUGCaCGCGUCCG--CCGGG- -5'
26469 3' -60.5 NC_005357.1 + 41826 0.71 0.185447
Target:  5'- cGCuGCugGcCGACc--CGCAGGCGGCCa -3'
miRNA:   3'- -CG-CGugC-GUUGcacGCGUCCGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.