Results 21 - 40 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26469 | 3' | -60.5 | NC_005357.1 | + | 17802 | 0.66 | 0.372205 |
Target: 5'- aGCGCGCGCAguauuccgccugcACGgaacccucGgGCGGGUugauGCCCg -3' miRNA: 3'- -CGCGUGCGU-------------UGCa-------CgCGUCCGc---CGGG- -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 16377 | 0.66 | 0.364532 |
Target: 5'- aGCGCAUGgAGCGcgcccgccGCGCGGGCuuugauGCCa -3' miRNA: 3'- -CGCGUGCgUUGCa-------CGCGUCCGc-----CGGg -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 24117 | 0.66 | 0.359478 |
Target: 5'- uGCGCGCGUAGgggucguaguccagcCGgcUGCGCGccUGGCCCa -3' miRNA: 3'- -CGCGUGCGUU---------------GC--ACGCGUccGCCGGG- -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 15070 | 0.66 | 0.356136 |
Target: 5'- -gGCugGaCGA-GUGCuGCgAGGuCGGCCCg -3' miRNA: 3'- cgCGugC-GUUgCACG-CG-UCC-GCCGGG- -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 5338 | 0.66 | 0.356136 |
Target: 5'- gGCGCA-GCAugGcaucGCGCuGcGUGGCCg -3' miRNA: 3'- -CGCGUgCGUugCa---CGCGuC-CGCCGGg -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 23523 | 0.66 | 0.356136 |
Target: 5'- -aGCGCGCcuuccaGGCG-GCGCAcGCGGUCg -3' miRNA: 3'- cgCGUGCG------UUGCaCGCGUcCGCCGGg -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 3562 | 0.66 | 0.356136 |
Target: 5'- aGCGCA-GCAGCGggcuggGCGUAcaccgauccGCGGCCg -3' miRNA: 3'- -CGCGUgCGUUGCa-----CGCGUc--------CGCCGGg -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 8656 | 0.66 | 0.356136 |
Target: 5'- cGCGC-CGUAcucGCuGUGUGCA-GCGGCUg -3' miRNA: 3'- -CGCGuGCGU---UG-CACGCGUcCGCCGGg -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 36172 | 0.66 | 0.354473 |
Target: 5'- cGCGCAgaucaacCGCAcCGUuaccggcGUGCAGGCccuGGCCg -3' miRNA: 3'- -CGCGU-------GCGUuGCA-------CGCGUCCG---CCGGg -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 13302 | 0.67 | 0.347877 |
Target: 5'- aGCGCGCcggggcCGGCGU-UGUAGGCGGCg- -3' miRNA: 3'- -CGCGUGc-----GUUGCAcGCGUCCGCCGgg -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 12140 | 0.67 | 0.347877 |
Target: 5'- cGCGcCACGCGcuGCGcuuccGCGUAGGCGucggggucaguGUCCg -3' miRNA: 3'- -CGC-GUGCGU--UGCa----CGCGUCCGC-----------CGGG- -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 36890 | 0.67 | 0.347059 |
Target: 5'- -gGCGgGCGACcUGgGCggaaccuGGGCGGCCg -3' miRNA: 3'- cgCGUgCGUUGcACgCG-------UCCGCCGGg -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 29598 | 0.67 | 0.345426 |
Target: 5'- gGCGCGCGguuugccaguugucCAGCGccggGCGCuuGUGGCCg -3' miRNA: 3'- -CGCGUGC--------------GUUGCa---CGCGucCGCCGGg -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 8885 | 0.67 | 0.339756 |
Target: 5'- gGCGCGgGCAucauugugaAUG-GCGCuaucGGCGGCgCg -3' miRNA: 3'- -CGCGUgCGU---------UGCaCGCGu---CCGCCGgG- -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 23750 | 0.67 | 0.339756 |
Target: 5'- -gGCcCGCGugGUGUaacaggccggggGCGGGCGaccGCCCc -3' miRNA: 3'- cgCGuGCGUugCACG------------CGUCCGC---CGGG- -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 3516 | 0.67 | 0.339756 |
Target: 5'- aGCGCGagaacccgagaGCGACGUGCcguucCAGGCGccGCCg -3' miRNA: 3'- -CGCGUg----------CGUUGCACGc----GUCCGC--CGGg -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 40054 | 0.67 | 0.338951 |
Target: 5'- aCGCACGCgGGCGUcugccacGUGCAGGCcgaauugcGGCgCa -3' miRNA: 3'- cGCGUGCG-UUGCA-------CGCGUCCG--------CCGgG- -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 37914 | 0.67 | 0.331773 |
Target: 5'- -aGCACGCcACGU-CaCGGGCGccGCCCg -3' miRNA: 3'- cgCGUGCGuUGCAcGcGUCCGC--CGGG- -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 7536 | 0.67 | 0.331773 |
Target: 5'- cGUGCGCucgGCGGCGUGCuCGauccGCGGCgCCa -3' miRNA: 3'- -CGCGUG---CGUUGCACGcGUc---CGCCG-GG- -5' |
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26469 | 3' | -60.5 | NC_005357.1 | + | 17074 | 0.67 | 0.323928 |
Target: 5'- cGCGCACGaagGCGaagccgGCGCGGuucuCGGCCg -3' miRNA: 3'- -CGCGUGCgu-UGCa-----CGCGUCc---GCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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