Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2647 | 5' | -56.9 | NC_001491.2 | + | 27077 | 0.66 | 0.891341 |
Target: 5'- aUGCGGuacaCGCGCGgCCAggccUCCGCg -3' miRNA: 3'- -ACGCCcag-GCGCGC-GGUaaa-AGGUGg -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 109017 | 0.66 | 0.891341 |
Target: 5'- aGCaGccUCGCGCGCCGUUgacaagUCCuGCCg -3' miRNA: 3'- aCGcCcaGGCGCGCGGUAAa-----AGG-UGG- -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 48381 | 0.66 | 0.889336 |
Target: 5'- aGCGGcUCaaGCGCGCCcccggcgcgaccgUCCACCc -3' miRNA: 3'- aCGCCcAGg-CGCGCGGuaaa---------AGGUGG- -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 31666 | 0.66 | 0.88458 |
Target: 5'- gGCGaGGacccccucaUCCGCGCaGCCAgcg-CgGCCg -3' miRNA: 3'- aCGC-CC---------AGGCGCG-CGGUaaaaGgUGG- -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 39691 | 0.66 | 0.88458 |
Target: 5'- aGgGGGUCaGCGUGuCCGUga-CCugCa -3' miRNA: 3'- aCgCCCAGgCGCGC-GGUAaaaGGugG- -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 147717 | 0.66 | 0.877598 |
Target: 5'- gGCaGGGUCCGgccCGCGUCAg---CC-CCu -3' miRNA: 3'- aCG-CCCAGGC---GCGCGGUaaaaGGuGG- -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 12633 | 0.66 | 0.855384 |
Target: 5'- gGCGGGaauuUCCcgaagGCGCGCgGggucgaCCACCg -3' miRNA: 3'- aCGCCC----AGG-----CGCGCGgUaaaa--GGUGG- -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 11716 | 0.66 | 0.855384 |
Target: 5'- gUGCugGGGUCCGCGCuGCUGgcaUCgGCg -3' miRNA: 3'- -ACG--CCCAGGCGCG-CGGUaaaAGgUGg -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 33481 | 0.67 | 0.839573 |
Target: 5'- -cCGGGUCUGCGCGgCCcucgggCC-CCg -3' miRNA: 3'- acGCCCAGGCGCGC-GGuaaaa-GGuGG- -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 27128 | 0.67 | 0.831386 |
Target: 5'- aGCGcGUCCGC-UGCC----UCCGCCg -3' miRNA: 3'- aCGCcCAGGCGcGCGGuaaaAGGUGG- -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 24582 | 0.67 | 0.828894 |
Target: 5'- cGCGGuGgucgaccCCGCGCGCCuucgggaaauucCCGCCc -3' miRNA: 3'- aCGCC-Ca------GGCGCGCGGuaaaa-------GGUGG- -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 51174 | 0.67 | 0.823021 |
Target: 5'- cUGCGGGUUguugCGCucggcaaaaGCGCCGg---CUACCa -3' miRNA: 3'- -ACGCCCAG----GCG---------CGCGGUaaaaGGUGG- -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 9860 | 0.67 | 0.823021 |
Target: 5'- cGCGGaGggCCGCGCGCaaucagUgCGCCc -3' miRNA: 3'- aCGCC-Ca-GGCGCGCGguaaa-AgGUGG- -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 91256 | 0.67 | 0.814485 |
Target: 5'- gGCGGuuGUuuGCGCcuCCAUguUUUUCACCa -3' miRNA: 3'- aCGCC--CAggCGCGc-GGUA--AAAGGUGG- -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 32066 | 0.68 | 0.805787 |
Target: 5'- cUGCccgGGGUCCcCGCaGCCcgagUUUCCAUCc -3' miRNA: 3'- -ACG---CCCAGGcGCG-CGGua--AAAGGUGG- -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 119480 | 0.68 | 0.805787 |
Target: 5'- cUGCGGGUCCcugGCaaGCUGUUaUCUGCUg -3' miRNA: 3'- -ACGCCCAGG---CGcgCGGUAAaAGGUGG- -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 27211 | 0.68 | 0.787935 |
Target: 5'- cGCGGuGUCCGUGCuggucggguauaGCCcg--UCCGCg -3' miRNA: 3'- aCGCC-CAGGCGCG------------CGGuaaaAGGUGg -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 26952 | 0.68 | 0.778798 |
Target: 5'- cGUGGGUCuccaccggCGcCGCGCCGagaUCCACg -3' miRNA: 3'- aCGCCCAG--------GC-GCGCGGUaaaAGGUGg -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 84477 | 0.68 | 0.778798 |
Target: 5'- aGCGcagagCCGgGCGCCcg--UCCACCa -3' miRNA: 3'- aCGCcca--GGCgCGCGGuaaaAGGUGG- -5' |
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2647 | 5' | -56.9 | NC_001491.2 | + | 140707 | 0.69 | 0.750649 |
Target: 5'- --aGGG-CCGUGCGCCuggcgCUACCu -3' miRNA: 3'- acgCCCaGGCGCGCGGuaaaaGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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