miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26471 5' -54.6 NC_005357.1 + 10013 0.66 0.673888
Target:  5'- ---cGCGCGCCCGGCCcccgcccuGGuAGAACu- -3'
miRNA:   3'- caguCGCGUGGGCUGG--------UCuUCUUGug -5'
26471 5' -54.6 NC_005357.1 + 33929 0.66 0.669368
Target:  5'- aUCAGgGCAUcgacguggacuaugCCGACCAGAucgccaaucugcuGGAACGg -3'
miRNA:   3'- cAGUCgCGUG--------------GGCUGGUCU-------------UCUUGUg -5'
26471 5' -54.6 NC_005357.1 + 9231 0.66 0.662577
Target:  5'- -gCGGCGCGCCCGGCggCAGuuccAGuuCACc -3'
miRNA:   3'- caGUCGCGUGGGCUG--GUCu---UCuuGUG- -5'
26471 5' -54.6 NC_005357.1 + 32640 0.66 0.662577
Target:  5'- uUCGGCGUGCgCGACCuGGccgcguGGAACGa -3'
miRNA:   3'- cAGUCGCGUGgGCUGGuCU------UCUUGUg -5'
26471 5' -54.6 NC_005357.1 + 12857 0.66 0.662577
Target:  5'- --gGGCGCGgCCGACCuGAcgcgauaccccGAGCACg -3'
miRNA:   3'- cagUCGCGUgGGCUGGuCUu----------CUUGUG- -5'
26471 5' -54.6 NC_005357.1 + 35264 0.66 0.651235
Target:  5'- cGUCAGCGCGUCgGGCCuGGGcuucaacgucauGAGCGCc -3'
miRNA:   3'- -CAGUCGCGUGGgCUGGuCUU------------CUUGUG- -5'
26471 5' -54.6 NC_005357.1 + 23943 0.66 0.651235
Target:  5'- gGUCAGgCGcCGCCCGGCgAGGucGGCAUu -3'
miRNA:   3'- -CAGUC-GC-GUGGGCUGgUCUucUUGUG- -5'
26471 5' -54.6 NC_005357.1 + 6638 0.66 0.651235
Target:  5'- uUC-GCGCGCuuGGCCGGAGuGuccGCGCu -3'
miRNA:   3'- cAGuCGCGUGggCUGGUCUU-Cu--UGUG- -5'
26471 5' -54.6 NC_005357.1 + 30899 0.66 0.650099
Target:  5'- -cCAGCcgacacuGCACCgGAUaCAGAAGGGCAUc -3'
miRNA:   3'- caGUCG-------CGUGGgCUG-GUCUUCUUGUG- -5'
26471 5' -54.6 NC_005357.1 + 34611 0.66 0.650099
Target:  5'- -gCAGcCGCGCCuCGACCAuaucagcGAguGGGACAUg -3'
miRNA:   3'- caGUC-GCGUGG-GCUGGU-------CU--UCUUGUG- -5'
26471 5' -54.6 NC_005357.1 + 26746 0.66 0.639874
Target:  5'- -cCAGCGCGCCCGcugcgauuCCAuAAG-GCGCa -3'
miRNA:   3'- caGUCGCGUGGGCu-------GGUcUUCuUGUG- -5'
26471 5' -54.6 NC_005357.1 + 28227 0.66 0.639874
Target:  5'- ---cGCuGCGCCUGACCuauGAcaAGGACACc -3'
miRNA:   3'- caguCG-CGUGGGCUGGu--CU--UCUUGUG- -5'
26471 5' -54.6 NC_005357.1 + 7145 0.67 0.617141
Target:  5'- cGUCGGCuGCgGCCUggauGACCAGGGccGGGCGCu -3'
miRNA:   3'- -CAGUCG-CG-UGGG----CUGGUCUU--CUUGUG- -5'
26471 5' -54.6 NC_005357.1 + 39682 0.67 0.617141
Target:  5'- gGUCGGCaCGCCCGAgCAGcgccGGGccGCGCu -3'
miRNA:   3'- -CAGUCGcGUGGGCUgGUCu---UCU--UGUG- -5'
26471 5' -54.6 NC_005357.1 + 4214 0.67 0.605791
Target:  5'- aUCGGCGCGCaCCGugCcaucgucgcAGAcguAGAugGCg -3'
miRNA:   3'- cAGUCGCGUG-GGCugG---------UCU---UCUugUG- -5'
26471 5' -54.6 NC_005357.1 + 16684 0.67 0.594464
Target:  5'- -gCAGCGCGCCCaGcgugcugccGCCGGuGAGGACGa -3'
miRNA:   3'- caGUCGCGUGGG-C---------UGGUC-UUCUUGUg -5'
26471 5' -54.6 NC_005357.1 + 6565 0.67 0.583172
Target:  5'- cGUCAGCGCAUCCuugaGGAAGuagcccAGCACg -3'
miRNA:   3'- -CAGUCGCGUGGGcuggUCUUC------UUGUG- -5'
26471 5' -54.6 NC_005357.1 + 34888 0.68 0.549591
Target:  5'- -cCGGcCGCgaGCCagCGugCGGAAGAACACu -3'
miRNA:   3'- caGUC-GCG--UGG--GCugGUCUUCUUGUG- -5'
26471 5' -54.6 NC_005357.1 + 8722 0.68 0.527536
Target:  5'- uGUC-GCGCACCUugaGCCGGGacaccAGGGCGCg -3'
miRNA:   3'- -CAGuCGCGUGGGc--UGGUCU-----UCUUGUG- -5'
26471 5' -54.6 NC_005357.1 + 28316 0.68 0.516632
Target:  5'- cUCGGCGCGCUCGGCguCGGAcucGAugGCc -3'
miRNA:   3'- cAGUCGCGUGGGCUG--GUCUu--CUugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.