Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26472 | 5' | -57.5 | NC_005357.1 | + | 236 | 0.68 | 0.397634 |
Target: 5'- gGCAUUGGcGCGCUGGguuuCCCCGGuggUGCCg- -3' miRNA: 3'- -CGUAGCC-UGUGACU----GGGGCU---GCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 626 | 0.67 | 0.47517 |
Target: 5'- cGCcgUGGACAC-GGCgUCCGGCGUCg- -3' miRNA: 3'- -CGuaGCCUGUGaCUG-GGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 7433 | 0.66 | 0.506145 |
Target: 5'- gGCGccCGGACACUu-CCUCGACGCg-- -3' miRNA: 3'- -CGUa-GCCUGUGAcuGGGGCUGCGgau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 7627 | 0.66 | 0.537953 |
Target: 5'- aGCGcCGGACACgUGGCCuuGGC-CUUGc -3' miRNA: 3'- -CGUaGCCUGUG-ACUGGggCUGcGGAU- -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 7687 | 0.72 | 0.236344 |
Target: 5'- uCGUCGGGC-UUGACCUCGGCgGCCg- -3' miRNA: 3'- cGUAGCCUGuGACUGGGGCUG-CGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 8003 | 0.73 | 0.185947 |
Target: 5'- gGCGUCGGACG-UGcCCuuGGCGCCa- -3' miRNA: 3'- -CGUAGCCUGUgACuGGggCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 9070 | 0.7 | 0.283073 |
Target: 5'- gGUAUCGGGgugcauccccuCACUGGCCgCGAgGCCg- -3' miRNA: 3'- -CGUAGCCU-----------GUGACUGGgGCUgCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 9559 | 0.69 | 0.336821 |
Target: 5'- -aGUCGGGCGCgacaAUCUCGGCGCCg- -3' miRNA: 3'- cgUAGCCUGUGac--UGGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 12827 | 0.69 | 0.353484 |
Target: 5'- gGCGcUGGACaACUGGCaaaCCGcGCGCCUGg -3' miRNA: 3'- -CGUaGCCUG-UGACUGg--GGC-UGCGGAU- -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 13340 | 0.79 | 0.075616 |
Target: 5'- cGCA-CGGGC-CUGACCUCGGCGCCc- -3' miRNA: 3'- -CGUaGCCUGuGACUGGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 13472 | 0.69 | 0.328707 |
Target: 5'- gGUGUCGGGCA-UGACCUgggCGAUGCCg- -3' miRNA: 3'- -CGUAGCCUGUgACUGGG---GCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 17353 | 0.67 | 0.455053 |
Target: 5'- gGCAUCGGACACcaucGCCUgCGACagguauGCCUGc -3' miRNA: 3'- -CGUAGCCUGUGac--UGGG-GCUG------CGGAU- -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 18705 | 0.66 | 0.494683 |
Target: 5'- cGCGccacCGaGGCACUGGCCCgCGACcugggcgcuaccgGCCUGu -3' miRNA: 3'- -CGUa---GC-CUGUGACUGGG-GCUG-------------CGGAU- -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 20128 | 0.66 | 0.527268 |
Target: 5'- aGCAUCGuGCuGCccGACUUCGACGCCg- -3' miRNA: 3'- -CGUAGCcUG-UGa-CUGGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 21808 | 0.66 | 0.49572 |
Target: 5'- cGCAggCcGACACcGACCUgCGACGCCg- -3' miRNA: 3'- -CGUa-GcCUGUGaCUGGG-GCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 23175 | 0.66 | 0.506145 |
Target: 5'- aGCAUC-GACGCcgagaaguucaUGGgCCUGACGCCg- -3' miRNA: 3'- -CGUAGcCUGUG-----------ACUgGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 24451 | 0.71 | 0.25553 |
Target: 5'- gGCcUCGGcgACAUUGACgCCGACGaCCUGc -3' miRNA: 3'- -CGuAGCC--UGUGACUGgGGCUGC-GGAU- -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 24966 | 0.66 | 0.527268 |
Target: 5'- uGCAggcccuggCGuGGCAcCUGGCCUCGAUGCUg- -3' miRNA: 3'- -CGUa-------GC-CUGU-GACUGGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 26252 | 0.66 | 0.516663 |
Target: 5'- gGCGUCGGugA---ACUCCGACGCg-- -3' miRNA: 3'- -CGUAGCCugUgacUGGGGCUGCGgau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 27435 | 0.66 | 0.485393 |
Target: 5'- cGCGcccggCGGcCGCaGGCCCUGGCGCUg- -3' miRNA: 3'- -CGUa----GCCuGUGaCUGGGGCUGCGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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