miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26472 5' -57.5 NC_005357.1 + 37330 0.75 0.141287
Target:  5'- cGCAcCGGACGCUGGgCCgGcCGCCUGu -3'
miRNA:   3'- -CGUaGCCUGUGACUgGGgCuGCGGAU- -5'
26472 5' -57.5 NC_005357.1 + 33956 0.66 0.516663
Target:  5'- cGCGUCGGcugcgGCAUcGcaggccACCUCGACGCCg- -3'
miRNA:   3'- -CGUAGCC-----UGUGaC------UGGGGCUGCGGau -5'
26472 5' -57.5 NC_005357.1 + 7433 0.66 0.506145
Target:  5'- gGCGccCGGACACUu-CCUCGACGCg-- -3'
miRNA:   3'- -CGUa-GCCUGUGAcuGGGGCUGCGgau -5'
26472 5' -57.5 NC_005357.1 + 27435 0.66 0.485393
Target:  5'- cGCGcccggCGGcCGCaGGCCCUGGCGCUg- -3'
miRNA:   3'- -CGUa----GCCuGUGaCUGGGGCUGCGGau -5'
26472 5' -57.5 NC_005357.1 + 30154 0.67 0.47517
Target:  5'- cGCGUCGGACAUcagcGGCagUUGGCGCCa- -3'
miRNA:   3'- -CGUAGCCUGUGa---CUGg-GGCUGCGGau -5'
26472 5' -57.5 NC_005357.1 + 626 0.67 0.47517
Target:  5'- cGCcgUGGACAC-GGCgUCCGGCGUCg- -3'
miRNA:   3'- -CGuaGCCUGUGaCUG-GGGCUGCGGau -5'
26472 5' -57.5 NC_005357.1 + 17353 0.67 0.455053
Target:  5'- gGCAUCGGACACcaucGCCUgCGACagguauGCCUGc -3'
miRNA:   3'- -CGUAGCCUGUGac--UGGG-GCUG------CGGAU- -5'
26472 5' -57.5 NC_005357.1 + 32959 0.68 0.397634
Target:  5'- uGCGUCGauuacuGGCAa-GACCCgGACGCCa- -3'
miRNA:   3'- -CGUAGC------CUGUgaCUGGGgCUGCGGau -5'
26472 5' -57.5 NC_005357.1 + 236 0.68 0.397634
Target:  5'- gGCAUUGGcGCGCUGGguuuCCCCGGuggUGCCg- -3'
miRNA:   3'- -CGUAGCC-UGUGACU----GGGGCU---GCGGau -5'
26472 5' -57.5 NC_005357.1 + 13472 0.69 0.328707
Target:  5'- gGUGUCGGGCA-UGACCUgggCGAUGCCg- -3'
miRNA:   3'- -CGUAGCCUGUgACUGGG---GCUGCGGau -5'
26472 5' -57.5 NC_005357.1 + 36133 0.7 0.290316
Target:  5'- cGCAcCGGAgAUaaGCCCCGGCGCCc- -3'
miRNA:   3'- -CGUaGCCUgUGacUGGGGCUGCGGau -5'
26472 5' -57.5 NC_005357.1 + 36478 0.7 0.283073
Target:  5'- cGCGcUGGACAaUGGCCCCGuguACGUCUGg -3'
miRNA:   3'- -CGUaGCCUGUgACUGGGGC---UGCGGAU- -5'
26472 5' -57.5 NC_005357.1 + 9070 0.7 0.283073
Target:  5'- gGUAUCGGGgugcauccccuCACUGGCCgCGAgGCCg- -3'
miRNA:   3'- -CGUAGCCU-----------GUGACUGGgGCUgCGGau -5'
26472 5' -57.5 NC_005357.1 + 24451 0.71 0.25553
Target:  5'- gGCcUCGGcgACAUUGACgCCGACGaCCUGc -3'
miRNA:   3'- -CGuAGCC--UGUGACUGgGGCUGC-GGAU- -5'
26472 5' -57.5 NC_005357.1 + 12827 0.69 0.353484
Target:  5'- gGCGcUGGACaACUGGCaaaCCGcGCGCCUGg -3'
miRNA:   3'- -CGUaGCCUG-UGACUGg--GGC-UGCGGAU- -5'
26472 5' -57.5 NC_005357.1 + 9559 0.69 0.336821
Target:  5'- -aGUCGGGCGCgacaAUCUCGGCGCCg- -3'
miRNA:   3'- cgUAGCCUGUGac--UGGGGCUGCGGau -5'
26472 5' -57.5 NC_005357.1 + 7687 0.72 0.236344
Target:  5'- uCGUCGGGC-UUGACCUCGGCgGCCg- -3'
miRNA:   3'- cGUAGCCUGuGACUGGGGCUG-CGGau -5'
26472 5' -57.5 NC_005357.1 + 8003 0.73 0.185947
Target:  5'- gGCGUCGGACG-UGcCCuuGGCGCCa- -3'
miRNA:   3'- -CGUAGCCUGUgACuGGggCUGCGGau -5'
26472 5' -57.5 NC_005357.1 + 13340 0.79 0.075616
Target:  5'- cGCA-CGGGC-CUGACCUCGGCGCCc- -3'
miRNA:   3'- -CGUaGCCUGuGACUGGGGCUGCGGau -5'
26472 5' -57.5 NC_005357.1 + 7627 0.66 0.537953
Target:  5'- aGCGcCGGACACgUGGCCuuGGC-CUUGc -3'
miRNA:   3'- -CGUaGCCUGUG-ACUGGggCUGcGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.