Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26472 | 5' | -57.5 | NC_005357.1 | + | 20128 | 0.66 | 0.527268 |
Target: 5'- aGCAUCGuGCuGCccGACUUCGACGCCg- -3' miRNA: 3'- -CGUAGCcUG-UGa-CUGGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 34833 | 0.67 | 0.465055 |
Target: 5'- gGCAgaCGGACA--GACCCUGAC-CCUAc -3' miRNA: 3'- -CGUa-GCCUGUgaCUGGGGCUGcGGAU- -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 41785 | 0.67 | 0.445169 |
Target: 5'- aGCcUUGGGCACcGA-CUCGACGCCg- -3' miRNA: 3'- -CGuAGCCUGUGaCUgGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 35892 | 0.68 | 0.406879 |
Target: 5'- gGCGauUCGGGCgACgacGACCCCGAaaaacuCGCCa- -3' miRNA: 3'- -CGU--AGCCUG-UGa--CUGGGGCU------GCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 12827 | 0.69 | 0.353484 |
Target: 5'- gGCGcUGGACaACUGGCaaaCCGcGCGCCUGg -3' miRNA: 3'- -CGUaGCCUG-UGACUGg--GGC-UGCGGAU- -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 9559 | 0.69 | 0.336821 |
Target: 5'- -aGUCGGGCGCgacaAUCUCGGCGCCg- -3' miRNA: 3'- cgUAGCCUGUGac--UGGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 7687 | 0.72 | 0.236344 |
Target: 5'- uCGUCGGGC-UUGACCUCGGCgGCCg- -3' miRNA: 3'- cGUAGCCUGuGACUGGGGCUG-CGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 8003 | 0.73 | 0.185947 |
Target: 5'- gGCGUCGGACG-UGcCCuuGGCGCCa- -3' miRNA: 3'- -CGUAGCCUGUgACuGGggCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 13340 | 0.79 | 0.075616 |
Target: 5'- cGCA-CGGGC-CUGACCUCGGCGCCc- -3' miRNA: 3'- -CGUaGCCUGuGACUGGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 30262 | 1.08 | 0.000475 |
Target: 5'- cGCAUCGGACACUGACCCCGACGCCUAc -3' miRNA: 3'- -CGUAGCCUGUGACUGGGGCUGCGGAU- -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 7627 | 0.66 | 0.537953 |
Target: 5'- aGCGcCGGACACgUGGCCuuGGC-CUUGc -3' miRNA: 3'- -CGUaGCCUGUG-ACUGGggCUGcGGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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