Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26472 | 5' | -57.5 | NC_005357.1 | + | 9559 | 0.69 | 0.336821 |
Target: 5'- -aGUCGGGCGCgacaAUCUCGGCGCCg- -3' miRNA: 3'- cgUAGCCUGUGac--UGGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 13472 | 0.69 | 0.328707 |
Target: 5'- gGUGUCGGGCA-UGACCUgggCGAUGCCg- -3' miRNA: 3'- -CGUAGCCUGUgACUGGG---GCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 36133 | 0.7 | 0.290316 |
Target: 5'- cGCAcCGGAgAUaaGCCCCGGCGCCc- -3' miRNA: 3'- -CGUaGCCUgUGacUGGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 36478 | 0.7 | 0.283073 |
Target: 5'- cGCGcUGGACAaUGGCCCCGuguACGUCUGg -3' miRNA: 3'- -CGUaGCCUGUgACUGGGGC---UGCGGAU- -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 9070 | 0.7 | 0.283073 |
Target: 5'- gGUAUCGGGgugcauccccuCACUGGCCgCGAgGCCg- -3' miRNA: 3'- -CGUAGCCU-----------GUGACUGGgGCUgCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 24451 | 0.71 | 0.25553 |
Target: 5'- gGCcUCGGcgACAUUGACgCCGACGaCCUGc -3' miRNA: 3'- -CGuAGCC--UGUGACUGgGGCUGC-GGAU- -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 7687 | 0.72 | 0.236344 |
Target: 5'- uCGUCGGGC-UUGACCUCGGCgGCCg- -3' miRNA: 3'- cGUAGCCUGuGACUGGGGCUG-CGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 8003 | 0.73 | 0.185947 |
Target: 5'- gGCGUCGGACG-UGcCCuuGGCGCCa- -3' miRNA: 3'- -CGUAGCCUGUgACuGGggCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 37330 | 0.75 | 0.141287 |
Target: 5'- cGCAcCGGACGCUGGgCCgGcCGCCUGu -3' miRNA: 3'- -CGUaGCCUGUGACUgGGgCuGCGGAU- -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 13340 | 0.79 | 0.075616 |
Target: 5'- cGCA-CGGGC-CUGACCUCGGCGCCc- -3' miRNA: 3'- -CGUaGCCUGuGACUGGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 30262 | 1.08 | 0.000475 |
Target: 5'- cGCAUCGGACACUGACCCCGACGCCUAc -3' miRNA: 3'- -CGUAGCCUGUGACUGGGGCUGCGGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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